View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6193_low_4 (Length: 445)
Name: NF6193_low_4
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6193_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 264 - 438
Target Start/End: Complemental strand, 38498096 - 38497922
Alignment:
| Q |
264 |
atgattagggataaacttgagttgaaagctattaaagatggatcagtgagctatgctgcattggagaagaaggctgagttgtatgataagttagttaagg |
363 |
Q |
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| T |
38498096 |
atgattagggataaacttgagttgaaagctattaaagatggatcagtgagctatgctgcattggagaagaaggctgagttgtatgataagttagttaagg |
38497997 |
T |
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| Q |
364 |
gagaattgtctgatgaagaggataaagagaagtattgtgttgattttgttcgtaagagcgatgatcatgatgatg |
438 |
Q |
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| T |
38497996 |
gagaattgtctgatgaagaggataaagagaagtattgtgttgattttgttcgtaagagcgatgatcatgatgatg |
38497922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 38498353 - 38498130
Alignment:
| Q |
7 |
tgaatagataaaagtgaattgaacnnnnnnnttgagtctggaaatcaattttagaattaaagctcaaaacttagcttctaggtagaatcaattatggagg |
106 |
Q |
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| T |
38498353 |
tgaatatataaaagtgagttgaacaaaaaaattgagtctggtaatcaattttagaatcaaagctcaaaatttagcttctaggtagaatcaattatggagg |
38498254 |
T |
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| Q |
107 |
caaattaaattatactcaagagcagccaaacctgtcagaattgcttctaaagtggaaccaaacatacatttatatctttagataatacctaattgaattt |
206 |
Q |
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| T |
38498253 |
caaaataaattatactcaagagcagccaaacctgtcagaattgcttctaaagtggaaccaaacatacatttatatctttagataatacctaattgaattt |
38498154 |
T |
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| Q |
207 |
ctgtttgttgataattgagattaa |
230 |
Q |
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| T |
38498153 |
gtgtttgttgataattgagattaa |
38498130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 31453392 - 31453332
Alignment:
| Q |
88 |
gtagaatcaattatggaggcaaattaaattatactcaagagcagccaaacctgtcagaatt |
148 |
Q |
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|||||||||||||| |||||||| |||||| ||||||| | || |||||| || ||||||| |
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| T |
31453392 |
gtagaatcaattatagaggcaaaataaattctactcaacatcaaccaaacatgacagaatt |
31453332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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