View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6193_low_6 (Length: 401)
Name: NF6193_low_6
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6193_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 29406714 - 29407087
Alignment:
| Q |
19 |
attatagtgtatacaacgatttgcgatatcaatatcaaacctatcttgacttgcaaaatgacggtccttatattaatcaaaagacgtaatttgaagaata |
118 |
Q |
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| T |
29406714 |
attatagtgtatacaacgatttgcgatatcaatatcaaacctatcttgacttgcaaaatgacggtccttatattaatcaaaagacttaatttgaagaata |
29406813 |
T |
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| Q |
119 |
tattttaggtttatggagccattgacaacaggagattatccaagttctatgcaatcattggtcggaagcagattaccaaaattctctaaacatgaagtca |
218 |
Q |
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| T |
29406814 |
tattttaggtttatggagccattgacaacaggagattatccaagttctatgcaatcattggtcggaagcagattaccaaaattctctaaacatgaagtca |
29406913 |
T |
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| Q |
219 |
agcttgtaaaagggtcctttgatttcatcggattaaactattacacttcaaattatgctaccgatgcacctgaattaagcgaatccaggcctagcttgct |
318 |
Q |
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| T |
29406914 |
agcttgtaaaagggtcctttgatttcatcggattaaactattacacttcaaattatgctaccgatgcacctgaattaagcgaatccaggcctagcttgct |
29407013 |
T |
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| Q |
319 |
cacagattctcaagtcattactacaagtatgtattttattcaccatctttaaatcgacgatgatagagtattat |
392 |
Q |
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| T |
29407014 |
cacagattctcaagtcattactacaagtatgtattttattcaccatctttaaatcgacgatgatagagtattat |
29407087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 29457680 - 29457502
Alignment:
| Q |
119 |
tattttaggtttatggagccattgacaacaggagattatccaagttctatgcaatcattggtcggaagcagattaccaaaattctctaaacatgaagtca |
218 |
Q |
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| T |
29457680 |
tattgtaggtttatggatccattgacaataggagattatccaagctccatgaggtccttagtaggaagtcgattaccaaaattctcaaagtatcaagcaa |
29457581 |
T |
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| Q |
219 |
agcttgtaaaagggtcctttgatttcatcggattaaactattacacttcaaattatgctaccgatgcacctgaattaag |
297 |
Q |
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| T |
29457580 |
agcttgtaagagggtcctttgattttattggattaaactattatacttccagttatgcaactaatgcacctgaattaag |
29457502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 297
Target Start/End: Original strand, 29424208 - 29424389
Alignment:
| Q |
116 |
atatattttaggtttatggagccattgacaacaggagattatccaagttctatgcaatcattggtcggaagcagattaccaaaattctctaaacatgaag |
215 |
Q |
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| T |
29424208 |
atatattgcaggtatatggatccattgacaattggagactatccaagctccatgaggtccttagtagggagtcgattaccaaagttctcaacatatcaag |
29424307 |
T |
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| Q |
216 |
tcaagcttgtaaaagggtcctttgatttcatcggattaaactattacacttcaaattatgctaccgatgcacctgaattaag |
297 |
Q |
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| T |
29424308 |
caaagctcgttaaaggatcctttgattttattggattaaactattacacttcccattatgcaactaatgcacctgaattaag |
29424389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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