View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6193_low_8 (Length: 334)
Name: NF6193_low_8
Description: NF6193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6193_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 732948 - 733123
Alignment:
| Q |
10 |
catcatcactctgagttttcttcattgaaacctcgtagtggaggaaacaataatcatggtgttattggttctactgctattgctcctgctacaagtgttc |
109 |
Q |
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| T |
732948 |
catcatcactctgagttttcttcattaaaacctcgtagtggaggaaacaataatcatggtgttattggttctactgctattgctcctgctacaagtgttc |
733047 |
T |
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| Q |
110 |
atgagttgttggaatgtcctgttcgtaccaattcaatgtatcctccaattcatcaggtttgctttatctacacata |
185 |
Q |
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| T |
733048 |
atgagttgttggaatgtcctgtttgtaccaattcaatgtatcctccaattcatcaggtttgctttatctacacata |
733123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 733197 - 733268
Alignment:
| Q |
259 |
acttgtttggtagattttaatgctttgtagtgttattgagttgatttggggcttatgatgatgatgatgtcc |
330 |
Q |
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| T |
733197 |
acttgtttggtagattttaatgctttgtagtgttattgagttgatttggggcttatgatgatgaggatgtcc |
733268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 9834159 - 9834231
Alignment:
| Q |
98 |
ctacaagtgttcatgagttgttggaatgtcctgttcgtaccaattcaatgtatcctccaattcatcaggtttg |
170 |
Q |
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| T |
9834159 |
ctactagtgttcatgagcttcttgaatgtcctgtttgtactaattcaatgtaccctccaattcatcaggtttg |
9834231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 41635109 - 41635030
Alignment:
| Q |
88 |
attgctcctgctacaagtgttcatgagttgttggaatgtcctgttcgtaccaattcaatgtatcctccaattcatcaggt |
167 |
Q |
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| T |
41635109 |
attgctcctgcaactagtgttcatgaattgcttgaatgtcctgtttgtactaattcaatgtaccctcctattcaccaggt |
41635030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 48543398 - 48543349
Alignment:
| Q |
121 |
gaatgtcctgttcgtaccaattcaatgtatcctccaattcatcaggtttg |
170 |
Q |
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| T |
48543398 |
gaatgtccggtttgcaccaattcaatgtaccctccaatccatcaggtttg |
48543349 |
T |
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