View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6195_high_1 (Length: 422)
Name: NF6195_high_1
Description: NF6195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6195_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 2928358 - 2928770
Alignment:
| Q |
1 |
tccttaaaagctctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtg |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928358 |
tccttaaaagctctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtg |
2928457 |
T |
|
| Q |
101 |
gtaacacacttttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2928458 |
gtaacacacttttttcataatcaatggtgacaaata-----agcatcctatgtatagcataaaaccacaagttctttgttacctgttcaacaaagtgtcg |
2928552 |
T |
|
| Q |
201 |
agcaacaacacgcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagacc |
300 |
Q |
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| T |
2928553 |
agcaacaacacgcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagacc |
2928652 |
T |
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| Q |
301 |
tatacatattaaatcctagagttaaattacggtccacaactgcaagtgcggtc---------------ataattttttacaaaaacatcacaaccgcaat |
385 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2928653 |
ta------------cctagaattaaattacggtccacaactgcaagtgcggtcataatataaaatattataattttttacaaaaacatcacaaccgcaat |
2928740 |
T |
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| Q |
386 |
tgactacatttacctgcattttagtataat |
415 |
Q |
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| T |
2928741 |
tgactacatttacctgcattttagtataat |
2928770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 2310703 - 2310431
Alignment:
| Q |
11 |
ctctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacact |
110 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| || || ||||||| ||| || |
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| T |
2310703 |
ctctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattagtcataccgacgattgaaaggtagtcgatcgataagtggtgacaatct |
2310604 |
T |
|
| Q |
111 |
tttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaaca |
210 |
Q |
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| T |
2310603 |
tttttcaaaatcaatggtgacaaatatctcaagcatcctatgtatagcataaaaccagaagctctttgttatcttttcagcaaagtgtcgagcaacaaca |
2310504 |
T |
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| Q |
211 |
cgcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagt |
287 |
Q |
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| T |
2310503 |
tgcgcaacctaattaacacgaaaaccaacataaactgattagtctctattat----cattagctgaaattagcaagt |
2310431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 415
Target Start/End: Complemental strand, 2310397 - 2310267
Alignment:
| Q |
295 |
gagacctatacatattaaatcctagagttaaattacggtccacaactgcaagtgcggtcataat----------tttttacaaaaacatcacaaccgcaa |
384 |
Q |
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||||||||| ||||||||||| |||| ||||||| ||||||||||||| || ||| |||| ||| ||| ||||||||| |||||||||||| |
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| T |
2310397 |
gagacctatccatattaaatcatagaattaaattgcggtccacaactggaaatgcagtcacaatatattaaaattttctacaaaaacgtcacaaccgcaa |
2310298 |
T |
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| Q |
385 |
ttgactacatttacctgcattttagtataat |
415 |
Q |
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||||||||||||||||| |||||||| |||| |
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| T |
2310297 |
ttgactacatttacctgaattttagtgtaat |
2310267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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