View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6195_low_3 (Length: 376)
Name: NF6195_low_3
Description: NF6195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6195_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 168 - 360
Target Start/End: Original strand, 22918537 - 22918731
Alignment:
| Q |
168 |
atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaagttacataatttttatctcctataaaa--aatacattaatatat |
265 |
Q |
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| T |
22918537 |
atattaagagtgtaagtttaaaaagatatgtaaagcaagatatttcaccacactaagttacataatttttatctcctataaaaaaaatacattaatatat |
22918636 |
T |
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| Q |
266 |
aggtgttaggaataagttatagttatctcatataaagtgtgtcttcgtgggaaaaatattaaacaaattgatgatgatatatttttgtttctgtg |
360 |
Q |
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| T |
22918637 |
aggtgataggaataagttatagttatctcatataaagtgtgtcttcatgggaaaaatattaaacaaactgatgatgatatatttttgtttctgtg |
22918731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 22918193 - 22918332
Alignment:
| Q |
22 |
attgctgatatcagtcagtggacttttccctcatgaccttttcgtttcctacttggcttcatcttaattaattcgatatgcttgtatgttctgttgaaaa |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22918193 |
attgttgatatcagtcagtggacttttccctcatgagcttttcgtttcctacttggcttcatcttaattaattcgatatgcttgtatgttctgttgaaaa |
22918292 |
T |
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| Q |
122 |
cgttttgagttcatgaagaaatgtagaacctgttatgaat |
161 |
Q |
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| T |
22918293 |
cattttgagttcatgaagaaatgtagaacctgttatgaat |
22918332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 3522766 - 3522858
Alignment:
| Q |
259 |
aatatataggtgttaggaataagttatagttatctcatataaagtgtgtcttcgtgggaaaaatattaaacaaattgatgatgatatattttt |
351 |
Q |
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| T |
3522766 |
aatatataggtgtgaggaataagttatagttatcttatataaagtgtgtcttcatgggaaacatattaaacaaactgatgatgatattttttt |
3522858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 43787478 - 43787533
Alignment:
| Q |
168 |
atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43787478 |
atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaa |
43787533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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