View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6195_low_6 (Length: 234)
Name: NF6195_low_6
Description: NF6195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6195_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 38120997 - 38121212
Alignment:
| Q |
1 |
ccgatgctccttcaccgcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacatt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120997 |
ccgatgctccttcacctcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacatt |
38121096 |
T |
|
| Q |
101 |
gcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121097 |
gcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
38121196 |
T |
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| Q |
201 |
tccaatgtaggcagag |
216 |
Q |
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|||||||||||||||| |
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| T |
38121197 |
tccaatgtaggcagag |
38121212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38609126 - 38608911
Alignment:
| Q |
1 |
ccgatgctccttcaccgcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacatt |
100 |
Q |
| |
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|||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
38609126 |
ccgacgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacatt |
38609027 |
T |
|
| Q |
101 |
gcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
200 |
Q |
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| T |
38609026 |
gcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
38608927 |
T |
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| Q |
201 |
tccaatgtaggcagag |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
38608926 |
tccaatgtaggcagag |
38608911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38793909 - 38793694
Alignment:
| Q |
1 |
ccgatgctccttcaccgcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacatt |
100 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
38793909 |
ccgacgctccttcacctcctaatatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacatt |
38793810 |
T |
|
| Q |
101 |
gcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793809 |
gcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
38793710 |
T |
|
| Q |
201 |
tccaatgtaggcagag |
216 |
Q |
| |
|
|||||||||||||||| |
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| T |
38793709 |
tccaatgtaggcagag |
38793694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 28730571 - 28730786
Alignment:
| Q |
1 |
ccgatgctccttcaccgcctaagatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacatt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
28730571 |
ccgatgctccttcacctcctaagatagtatcataagcatccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacatt |
28730670 |
T |
|
| Q |
101 |
gcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgc |
200 |
Q |
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|||||||||||||||||||| || || |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28730671 |
acggatgacgtcagcaaccttcaccctaacatagttaatcctcatcggtgctaatgtcactcctccaccggaagtagtgatcagaagcggctgacctcgc |
28730770 |
T |
|
| Q |
201 |
tccaatgtaggcagag |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
28730771 |
tccaatgtaggcagag |
28730786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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