View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6196_low_1 (Length: 423)
Name: NF6196_low_1
Description: NF6196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6196_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 6748031 - 6748414
Alignment:
| Q |
11 |
cacagatggtctcattgttctgcctgtgttctatgacggtgtctattcatcctacaaaagattgtgggtccgaagagatatgtacggagagggttttcat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6748031 |
cacagatggtctcattgttctgcctgtgttctatgacggtgtctattcatcctacaaaagattgtgggtccgaagagatatgtacggagagggttttcat |
6748130 |
T |
|
| Q |
111 |
gatttcatggatagaatctccatgaagaagaaaacctcttcggaagatgaagacaagttcatggcatgggtagcagcaatcagtaacgaagcttccatac |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6748131 |
aatttcatggatagaatctccatggagaagaaaacctcttcggaagatgaagacaagttcatggcatgggtagcagcaatcagtaatgaagcttccatac |
6748230 |
T |
|
| Q |
211 |
acgatggatctgattatttaggagactggcataagtaatgaaacttgctttatttgaaattagattactctgtctttatggaatttttaataacacatgt |
310 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6748231 |
atgatggatctgattatttaggagactggcataagtaatgaaacttgctttatttgaaattggattactctgtctttatggaatttttaataacacatgt |
6748330 |
T |
|
| Q |
311 |
tttgatttatttgaatataatgcgtttagcaaatttacattattttcacgtacacaaatgttggagaattgttatacatataat |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6748331 |
tttgatttatttgaatataatgcgtttagcaaatttacattattttcacgtacacaaatgttggagaattgttatacatataat |
6748414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 6737699 - 6738087
Alignment:
| Q |
14 |
agatggtctcattgttctgcctgtgttctatgacggtgtctattcatcctacaaaagattgtgggtccgaagagatatgtacggagagggttttcatgat |
113 |
Q |
| |
|
|||||||| ||||||| | ||| |||||||||| ||||||||||| || ||| ||||||| || |||||||| |||||||| ||| ||| || |
|
|
| T |
6737699 |
agatggtcccattgttttacctttgttctatgatggtgtctattcccccaacagaagattgcagga------agatatgttcggagaggctttacataat |
6737792 |
T |
|
| Q |
114 |
ttcatggatagaatctccatg-aagaagaaa--acctcttcggaagatgaagacaagttcatggcatgggtagcagcaatcagtaacgaagcttccatac |
210 |
Q |
| |
|
|| ||||||||||||| ||| |||| |||| ||||||| ||||||||||||||||||||| |||||||||| ||||||| | |||||||||| | |
|
|
| T |
6737793 |
tttctggatagaatctcaatggaagaggaaacaacctctttcgaagatgaagacaagttcatgagttgggtagcagaaatcagtgatgaagcttccaaat |
6737892 |
T |
|
| Q |
211 |
acgatggatctgattatttaggagactggcataagtaatgaaacttgctttatttgaaattagattactctgtctttatggaatttttaataacacatgt |
310 |
Q |
| |
|
| | || | | ||||||| || | | | |||||||| |||||||||| ||||||||||| || |||| ||||||| | |||||||||| | |||| |
|
|
| T |
6737893 |
atgctgcgtgagcttatttacgatgcggacgtaagtaat-aaacttgcttgatttgaaattatataactccatctttattgcatttttaatactaaatgt |
6737991 |
T |
|
| Q |
311 |
tttgatttatttgaatataatgcgtttagcaaatttacattattttcacgtacacaaatgttggagaattgttatacatataatggtctcttgtttct |
408 |
Q |
| |
|
||||||| |||||| ||| ||| |||||||||||||| | ||||||| || || || |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6737992 |
tttgattcatttgactattatgagtttagcaaatttag--tgttttcacttatgcacattttggagaattgttatacatataatcgtctcttgtttct |
6738087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 6543015 - 6542894
Alignment:
| Q |
86 |
agatatgtacggagagggttttcatgatttcatggatagaatctccatgaagaagaaaacctcttcggaagatgaagacaagttcatggcatgggtagca |
185 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||||||||| || |||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
6543015 |
agatatgtatggagaggcttttcatgattttctggatagaatttcaatgaaggagaaaacctcttccgaagatgaagacaagttcatgagttgggtagca |
6542916 |
T |
|
| Q |
186 |
gcaatcagtaacgaagcttcca |
207 |
Q |
| |
|
| |||||| || |||||||||| |
|
|
| T |
6542915 |
gaaatcagcaatgaagcttcca |
6542894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 6503147 - 6502960
Alignment:
| Q |
11 |
cacagatggtctcattgttctgcctgtgttctatgacggtgtctattcatcctacaaaagattgtgggtccgaagagatatgtacggagagggttttcat |
110 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
6503147 |
cacagatggtctcatttttctgtctgtgttctatgatgatgtctattcatccgacaaaagattgtgggtccgacgagatatctttggagag--------- |
6503057 |
T |
|
| Q |
111 |
gatttcatggatagaatctccatgaagaagaaaacctcttcggaagatgaagacaagttcatggcatgggtagcagcaatcagtaacgaagcttcca |
207 |
Q |
| |
|
||||| | || |||||||| || ||||| |||| | ||| ||||| ||||||||||||||| | |||||||||||| ||| ||| |||||||||| |
|
|
| T |
6503056 |
gattttgtagacagaatctcgatcgagaaggaaacatgttctgaagacgaagacaagttcatgacttgggtagcagcagtcactaatgaagcttcca |
6502960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 6506650 - 6506458
Alignment:
| Q |
15 |
gatggtctcattgttctgcctgtgttctatgacggtgtctattcatcctacaaaagattgtgggtccgaagagatatgtacggagagggttttcatgatt |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || |||||||||||| |||||| || |||| | |||||||| ||| | ||| | ||||||||||| |
|
|
| T |
6506650 |
gatggtcttattgttctgcctgtgttctatgatggcgtctattcatccgacaaaattgtgcgggtaccaagagatacgtatgtagatgcttttcatgatt |
6506551 |
T |
|
| Q |
115 |
tcatggatagaatctccatgaagaagaaaacctcttcggaagatgaagacaagttcatggcatgggtagcagcaatcagtaacgaagcttcca |
207 |
Q |
| |
|
|||| | ||||| ||| | || |||||||||| | ||||||||||||||| ||| | ||| ||||||| |||| ||| ||||||||| |
|
|
| T |
6506550 |
atgtggacaaaatcttgatgctggaggaaacctcttctgcagatgaagacaagtttatgacttggatagcagctatcactaatcaagcttcca |
6506458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 6542849 - 6542769
Alignment:
| Q |
265 |
tgaaattagattactctgtctttatggaatttttaataacacatgttttgatttatttgaatataatgcgtttagcaaatt |
345 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| | ||||||||||| || ||| ||| ||| |||||||||||| |
|
|
| T |
6542849 |
tgaaattagattactaaatctttatggcatttttaatactaaatgttttgattcatgtgactattatgagtttagcaaatt |
6542769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University