View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6196_low_2 (Length: 381)
Name: NF6196_low_2
Description: NF6196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6196_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 109 - 370
Target Start/End: Original strand, 55207991 - 55208253
Alignment:
| Q |
109 |
aatatctgagtgattattttctttcttttactatgtatgagtcacacacagatcatgcacttggaaatctaaattcattgaattgattcattcattcatc |
208 |
Q |
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| T |
55207991 |
aatatctgagtgattattttctttcttttactatatatgaatcacacacagatcatgcacttggaaatctaaattcattgaattgattcattcattcatc |
55208090 |
T |
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| Q |
209 |
atagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgcatgtggtttattgtttggtgtttaccgcgttccacacactcctc |
308 |
Q |
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| T |
55208091 |
atagtataaccaaacaaacaaatgcctctgaccgatttttgagtcacaaaatctgca-gtggtttattgtttggtgtttaccgcgttccacacactcctc |
55208189 |
T |
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| Q |
309 |
-ttaaagctcacactacactataaattaggaagaaaatcatatttccatttcag-tactcctat |
370 |
Q |
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| T |
55208190 |
tttaaagctcacactacactataaattaggaacaaaatcatatttccatttcagttactcctat |
55208253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 55207898 - 55207963
Alignment:
| Q |
19 |
tatactacgtgtacgtatgcttcagttttggacatgagatgtggcgctttgaattaatttcctttt |
84 |
Q |
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| T |
55207898 |
tatactacgtgtacgtatgcttcagttttggacatgagatgaggcgctttgaattaatttcctttt |
55207963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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