View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6196_low_3 (Length: 303)

Name: NF6196_low_3
Description: NF6196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6196_low_3
NF6196_low_3
[»] chr3 (11 HSPs)
chr3 (121-293)||(22424287-22424459)
chr3 (140-296)||(52041298-52041454)
chr3 (18-121)||(22424506-22424609)
chr3 (140-296)||(42655773-42655929)
chr3 (140-288)||(39484731-39484879)
chr3 (140-280)||(1141744-1141884)
chr3 (140-287)||(1529165-1529313)
chr3 (140-210)||(15291461-15291530)
chr3 (179-246)||(11582613-11582680)
chr3 (140-206)||(15996384-15996449)
chr3 (163-227)||(37605403-37605468)
[»] chr4 (9 HSPs)
chr4 (143-290)||(9451245-9451392)
chr4 (139-290)||(24257702-24257854)
chr4 (139-209)||(12094856-12094926)
chr4 (139-262)||(27067873-27067996)
chr4 (140-210)||(6898752-6898822)
chr4 (162-210)||(7810069-7810116)
chr4 (183-251)||(9201332-9201400)
chr4 (179-251)||(10427607-10427678)
chr4 (188-251)||(9199798-9199861)
[»] chr6 (8 HSPs)
chr6 (139-294)||(21762021-21762176)
chr6 (140-260)||(826682-826802)
chr6 (143-276)||(30836415-30836548)
chr6 (140-227)||(31442517-31442604)
chr6 (140-210)||(7867948-7868018)
chr6 (140-209)||(31665629-31665699)
chr6 (139-227)||(20915980-20916068)
chr6 (142-209)||(15296147-15296215)
[»] chr2 (11 HSPs)
chr2 (140-290)||(29280085-29280235)
chr2 (139-294)||(38955756-38955911)
chr2 (139-288)||(38996442-38996591)
chr2 (140-294)||(22625302-22625457)
chr2 (140-211)||(32281486-32281557)
chr2 (147-294)||(10601213-10601360)
chr2 (139-210)||(28125535-28125606)
chr2 (140-210)||(6667463-6667532)
chr2 (140-210)||(28922416-28922485)
chr2 (140-209)||(28926075-28926144)
chr2 (143-208)||(21922337-21922402)
[»] chr1 (4 HSPs)
chr1 (140-250)||(22964007-22964117)
chr1 (151-243)||(3908796-3908888)
chr1 (139-211)||(15700720-15700792)
chr1 (140-227)||(46555502-46555590)
[»] chr8 (9 HSPs)
chr8 (139-270)||(3193115-3193245)
chr8 (140-251)||(26083903-26084014)
chr8 (140-209)||(45244285-45244355)
chr8 (140-209)||(42315342-42315412)
chr8 (140-209)||(23828343-23828413)
chr8 (179-288)||(5334312-5334421)
chr8 (179-227)||(26981074-26981122)
chr8 (139-201)||(4966439-4966502)
chr8 (139-201)||(9888957-9889020)
[»] chr5 (8 HSPs)
chr5 (139-275)||(31981792-31981927)
chr5 (179-251)||(9045162-9045234)
chr5 (141-210)||(22780060-22780128)
chr5 (139-209)||(37337322-37337393)
chr5 (139-212)||(6697934-6698007)
chr5 (139-209)||(23045483-23045554)
chr5 (140-209)||(11300764-11300834)
chr5 (140-209)||(26110688-26110758)
[»] chr7 (5 HSPs)
chr7 (179-227)||(4407816-4407864)
chr7 (141-231)||(6253382-6253472)
chr7 (139-227)||(20077325-20077413)
chr7 (139-207)||(39742297-39742365)
chr7 (139-210)||(48850725-48850795)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 121 - 293
Target Start/End: Complemental strand, 22424459 - 22424287
Alignment:
Q  121 gctaaatagaacttgctcaatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaaca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22424459 gctaaatagaacttgctcaatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacctaaaca 22424360  T
Q  221 tttaatttttgttagtacttttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22424359 tttaatttttgttagtacttttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttg 22424287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 140 - 296
Target Start/End: Complemental strand, 52041454 - 52041298
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtact 239  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| ||    
T  52041454 atctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccatcacccaagcatttaattttggttagtgct 52041355  T
Q  240 tttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttgcta 296  Q
    |||||||||||| |||||||||| ||||||| ||||||||||| ||||| |||||||    
T  52041354 tttcctactcatcaagctaagttcaatttttaaatttccctcctacaacatttgcta 52041298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 22424609 - 22424506
Alignment:
Q  18 tgtaaaacatctatatcaataataacatcataacaatgcgttaagagaaagataatcctgatcttgatttcttatatgggcttaattaacaatgacaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22424609 tgtaaaacatctatatcaataataacatcataacaatgcgttaagagaaagataatcctgatcttgatttcttatatgggcttaattaacaatgacaagt 22424510  T
Q  118 ttgg 121  Q
    ||||    
T  22424509 ttgg 22424506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 296
Target Start/End: Original strand, 42655773 - 42655929
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtact 239  Q
    ||||||||||| |||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||  |||||  |    
T  42655773 atctttcttaccaaagcttgtctggtcaagctattgttcaccctaattttaacataatattttcccttcatcacccaagcatttaattttgattagtgtt 42655872  T
Q  240 tttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttgcta 296  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||| ||| |||||||    
T  42655873 tttcctactcatcaagctaagttcaatttttaaatttccctcccataacatttgcta 42655929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 140 - 288
Target Start/End: Complemental strand, 39484879 - 39484731
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctat-tgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtac 238  Q
    |||||||||||||||| || | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| | |    
T  39484879 atctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaaacatttaattttaattaatgc 39484780  T
Q  239 ttttcctactcattaagctaagttgaatttttgaatttccctcccacaac 288  Q
    |||||||||||||    ||||||| ||||||| || |||||| |||||||    
T  39484779 ttttcctactcatctttctaagttcaattttt-aaattccctgccacaac 39484731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 1141744 - 1141884
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtact 239  Q
    |||||||||||||||| || | ||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||||||  |||||  |    
T  1141744 atctttcttactaaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccatcccccaagcatttaattttcattagtgtt 1141843  T
Q  240 tttcctactcattaagctaagttgaatttttgaatttccct 280  Q
    |||||||||||  ||||| |||| ||||||| |||||||||    
T  1141844 tttcctactcaacaagctgagttcaatttttaaatttccct 1141884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 140 - 287
Target Start/End: Original strand, 1529165 - 1529313
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaatt-ttaacctaatattttccctccatcacccaaacatttaatttttgttagtac 238  Q
    |||||||||||||||| || | |||||||||||||  | ||||||||| |||||||||| ||||||||||||||  ||| || |||||| | |||| |      
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccatcatacaagcaattaattctcgttaatgt 1529264  T
Q  239 ttttcctactcattaagctaagttgaatttttgaatttccctcccacaa 287  Q
    ||||||||||||| || ||||||| || |||| ||||||||||||||||    
T  1529265 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaa 1529313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 15291461 - 15291530
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 210  Q
    |||||||||||||||| || | |||||||||||||||| |||||||| |||||||||| ||||||||||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccat 15291530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 11582613 - 11582680
Alignment:
Q  179 accctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtacttttccta 246  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| |||| || |||||  ||||||||    
T  11582613 accctaattttaacctaatattttccctccgtcatccaaacattaaattcttcttagtgtttttccta 11582680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 15996449 - 15996384
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccct 206  Q
    |||||||||||||||| || |||| ||||||||||||| ||||||||| ||||||||| ||||||||    
T  15996449 atctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaat-ttttccct 15996384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 37605468 - 37605403
Alignment:
Q  163 ggtcaagctattgttcaccctaatt-ttaacctaatattttccctccatcacccaaacatttaatt 227  Q
    ||||||||||||  | ||||||||| ||||||||||||||||||||||  |  |||||||||||||    
T  37605468 ggtcaagctattagtaaccctaattcttaacctaatattttccctccactaatcaaacatttaatt 37605403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 143 - 290
Target Start/End: Original strand, 9451245 - 9451392
Alignment:
Q  143 tttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtactttt 242  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaagcatttaattttcgttagtgctttt 9451344  T
Q  243 cctactcattaagctaagttgaatttttgaatttccctcccacaacct 290  Q
    | ||||||| |||||||||| ||||||| |||||||||||||||||||    
T  9451345 cgtactcatcaagctaagttcaatttttaaatttccctcccacaacct 9451392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 24257702 - 24257854
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaaca-tttaatttttgttagta 237  Q
    ||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || || ||||||| | ||| ||     
T  24257702 aatctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccatcacctaagcattttaattgtagttggtg 24257801  T
Q  238 cttttcctactcattaagctaagttgaatttttgaatttccctcccacaacct 290  Q
    ||||||||| |||| || ||||||| |||||||  || |||||||||||||||    
T  24257802 cttttcctaatcatcaaactaagttcaatttttatatctccctcccacaacct 24257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 12094926 - 12094856
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctcca 209  Q
    ||||||||||||||||| || | |||||||||||||    |||||||||||||||||||||||||||||||    
T  12094926 aatctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 262
Target Start/End: Original strand, 27067873 - 27067996
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtac 238  Q
    ||||||||||||||||| || | ||||||| ||||  |  ||||||||||||| ||||||||||||||  ||||   |  ||||||||| |  ||||| |    
T  27067873 aatctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaatattttcccttgatcataaacgcatttaattctccttagtgc 27067972  T
Q  239 ttttcctactcattaagctaagtt 262  Q
    ||||||||||||| ||||||||||    
T  27067973 ttttcctactcatcaagctaagtt 27067996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 6898822 - 6898752
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 210  Q
    |||||||||||||||| || | || ||||||||||| | |||||||| ||||||||||||||||| |||||    
T  6898822 atctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccat 6898752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 7810069 - 7810116
Alignment:
Q  162 tggtcaagctattgttcaccctaattttaacctaatattttccctccat 210  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||||    
T  7810069 tggtcaagctattgtttaccctaatcttaacctaat-ttttccctccat 7810116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 9201332 - 9201400
Alignment:
Q  183 taattttaacctaatattttccctccatcacccaaacatttaatttttgttagtacttttcctactcat 251  Q
    ||||||||||||||||||||||| |||||| |||| |||| |||| |  ||||| ||||||||| ||||    
T  9201332 taattttaacctaatattttcccaccatcatccaagcattaaattctccttagttcttttcctaatcat 9201400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 10427678 - 10427607
Alignment:
Q  179 accctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtacttttcctactcat 251  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| |||| || |||||  |||||||| ||||    
T  10427678 accctaattttaacctaata-tttccctccatcatccaagcattaaattcttcttagtgtttttcctaatcat 10427607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 9199798 - 9199861
Alignment:
Q  188 ttaacctaatattttccctccatcacccaaacatttaatttttgttagtacttttcctactcat 251  Q
    ||||||||||||||||||||||||| |||| |||| |||| |  ||||| ||||||||| ||||    
T  9199798 ttaacctaatattttccctccatcatccaagcattaaattctccttagttcttttcctaatcat 9199861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 139 - 294
Target Start/End: Original strand, 21762021 - 21762176
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtac 238  Q
    ||||||||||||||||  || |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||||| |||||| |    
T  21762021 aatctttcttactaaaacttgtctgatcaagctattgctcaccctaattttaacctactattttccctccatcacccaattatttaattttcgttagtgc 21762120  T
Q  239 ttttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttgc 294  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||    
T  21762121 ttttcctactcatcaagctaagttcaatttttaaatttccctcccacaacatttgc 21762176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 140 - 260
Target Start/End: Complemental strand, 826802 - 826682
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtact 239  Q
    |||||||||||||||  || |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||    
T  826802 atctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccatcgcccaatcatttaattttcgttagtgct 826703  T
Q  240 tttcctactcattaagctaag 260  Q
    |||||||||||| || |||||    
T  826702 tttcctactcatcaacctaag 826682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 143 - 276
Target Start/End: Complemental strand, 30836548 - 30836415
Alignment:
Q  143 tttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtactttt 242  Q
    ||||||||||||| || |||| |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||  | ||| ||||     
T  30836548 tttcttactaaagcttgtctgatcaagcaattgttcaccctaattttaatctaatattttccctccatcccccaagcatttaattttcatgagtgctttc 30836449  T
Q  243 cctactcattaagctaagttgaatttttgaattt 276  Q
    ||||||||  |||||||||| ||||||| |||||    
T  30836448 cctactcagcaagctaagttcaatttttaaattt 30836415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 31442517 - 31442604
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatt 227  Q
    |||||||||||||||| || | ||||||||| ||     |||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  31442517 atctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaatt 31442604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 7868018 - 7867948
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 210  Q
    |||||||||||||||| |||||||||||||||||     |||||||||| | |||||||||||||||||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccat 7867948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 31665699 - 31665629
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaatt-ttaacctaatattttccctcca 209  Q
    |||||||||||||||| || | |||||||||||||  | ||||||||| ||||||||||||||||||||||    
T  31665699 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 31665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 20916068 - 20915980
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctat-tgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatt 227  Q
    ||||||||||||||||| || |||| |||||| || || | ||| |||||||||||||||||||||||||||||| |||| |||| ||||    
T  20916068 aatctttcttactaaagcttgtctgatcaagcaatatgat-accttaattttaacctaatattttccctccatcatccaagcattaaatt 20915980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 15296147 - 15296215
Alignment:
Q  142 ctttcttactaaagtttatctggtcaagctattgttcaccctaatttt-aacctaatattttccctcca 209  Q
    |||||||||||||| || | | ||||||||||   | ||||||||||| ||||||||||||||||||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcca 15296215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 140 - 290
Target Start/End: Original strand, 29280085 - 29280235
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtact 239  Q
    |||||||||||||||  || |||| | ||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||| |||||| ||    
T  29280085 atctttcttactaaaacttgtctgatgaagctattgttcaccctaattttaacctaatattttccctcaatcacctaagcatgtaattttcgttagtgct 29280184  T
Q  240 tttcctactcattaagctaagttgaatttttgaatttccctcccacaacct 290  Q
    |||| ||||||| |||||||||| ||||||| |||||||||||||||||||    
T  29280185 tttcgtactcatcaagctaagttcaatttttaaatttccctcccacaacct 29280235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 139 - 294
Target Start/End: Complemental strand, 38955911 - 38955756
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtac 238  Q
    |||||| |||||||||| ||||||| |||| |||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |    
T  38955911 aatcttacttactaaagcttatctgatcaaactattgataaccctaattctaacctaatattttccctccatcacccaagcatttaatttttgttaatgc 38955812  T
Q  239 ttttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttgc 294  Q
    ||||||||||||  ||| |||| | ||  | | |||||||||||||||| ||||||    
T  38955811 ttttcctactcagcaaggtaagctcaaaatctaaatttccctcccacaatctttgc 38955756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 38996591 - 38996442
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctat-tgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagta 237  Q
    ||||||||||||||||| || |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||  ||||||||||||| |  |||||     
T  38996591 aatctttcttactaaagcttgtctgatcaagctatatgtt-accctaattttaacctaatattttccctccatcaaacaaacatttaattctgcttagtg 38996493  T
Q  238 cttttcctactcattaagctaagttgaatttttgaatttccctcccacaac 288  Q
     ||||||||||||| ||| |||||| || |||| ||||||||||| |||||    
T  38996492 tttttcctactcatcaagttaagttcaaattttaaatttccctcctacaac 38996442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 294
Target Start/End: Complemental strand, 22625457 - 22625302
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttg--ttagta 237  Q
    |||||||||||||||  || ||||||||||| ||||   ||||||||||||||||||||||||||||||||||||| | |||||||||||||   ||||     
T  22625457 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatagtg 22625358  T
Q  238 cttttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttgc 294  Q
    | |||||||||||  ||| | |||| ||||||| |||||||||||||| ||||||||    
T  22625357 c-tttcctactcagcaagttgagttcaatttttaaatttccctcccacgacctttgc 22625302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 32281486 - 32281557
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatc 211  Q
    ||||||||||||||||||| | |||||||||||||  | ||||||||||||||||| |||||||||||||||    
T  32281486 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatc 32281557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 294
Target Start/End: Complemental strand, 10601360 - 10601213
Alignment:
Q  147 ttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtacttttccta 246  Q
    ||||||||| || ||| ||||||| |||||| | ||||||| |||| |||| ||||||| |||||||| || ||||||||||||||||||  ||||||||    
T  10601360 ttactaaagcttgtcttgtcaagcaattgtttaacctaattctaacataatcttttccc-ccatcacctaagcatttaatttttgttagt-gttttccta 10601263  T
Q  247 ctcattaagctaagttgaattttt--gaatttccctcccacaacctttgc 294  Q
    ||||  || ||||||| |||||||   |||||||| | ||||||||||||    
T  10601262 ctcagcaatctaagttcaatttttagtaatttcccactcacaacctttgc 10601213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 28125535 - 28125606
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 210  Q
    ||||||||||||||||| || ||||||||||||||     |||||||||| | |||||||||||||||||||    
T  28125535 aatctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccat 28125606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 6667463 - 6667532
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 210  Q
    ||||||||| |||||| || | |||||||||||||||| ||||||||  ||||||||| ||||||||||||    
T  6667463 atctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaat-ttttccctccat 6667532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 28922485 - 28922416
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 210  Q
    ||||| ||||||||||  | |||||||||||||||||| |||||||| |||||||||| |||||| |||||    
T  28922485 atcttacttactaaagcatgtctggtcaagctattgtttaccctaatcttaacctaat-ttttccatccat 28922416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 28926075 - 28926144
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaatt-ttaacctaatattttccctcca 209  Q
    |||||||||||||||| || |||||||||||||||  | ||||||||| |||||||||| |||||||||||    
T  28926075 atctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaat-ttttccctcca 28926144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 21922337 - 21922402
Alignment:
Q  143 tttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctcc 208  Q
    |||||| |||||| || |||| |||||||||   | |||||||| |||||||||||||||||||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctcc 21922402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 22964007 - 22964117
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtact 239  Q
    ||||| |||||||||| || |||||||||||||||| | ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| ||    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaattctaacctaatattttccctccatcaaccaagcatttaatttttgttagtgct 22964106  T
Q  240 tttcctactca 250  Q
    |||||||||||    
T  22964107 tttcctactca 22964117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 3908888 - 3908796
Alignment:
Q  151 taaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtacttttc 243  Q
    ||||| || |||| ||||||||||| | ||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||    
T  3908888 taaagcttgtctgatcaagctattggtaaccctaattttaacctactattttcccttcatcatccaaacatttaattttcgttagtacttttc 3908796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 15700720 - 15700792
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatc 211  Q
    |||||||||||||||||||| | |||||||||||||  | ||||||||||||||||| |||||||||||||||    
T  15700720 aatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatc 15700792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 46555502 - 46555590
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaatt-ttaacctaatattttccctccatcacccaaacatttaatt 227  Q
    |||||| ||||||||| || || ||||||||||||  | ||||||||| ||||||||||||||||||||||  |  |||||||||||||    
T  46555502 atctttattactaaagcttgtccggtcaagctattagtaaccctaattcttaacctaatattttccctccactaatcaaacatttaatt 46555590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 3193245 - 3193115
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtac 238  Q
    ||||||||||||||||| || ||||||||||  ||| |||| | ||||||||||||||||||||||||||||  |||||||||||||||||  | ||| |    
T  3193245 aatctttcttactaaagcttgtctggtcaagtaattattcatcttaattttaacctaatattttccctccat-tcccaaacatttaattttcatgagtgc 3193147  T
Q  239 ttttcctactcattaagctaagttgaattttt 270  Q
    ||||||||||||  ||||||| || |||||||    
T  3193146 ttttcctactcagcaagctaatttcaattttt 3193115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 26083903 - 26084014
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtact 239  Q
    |||||||||||||||| || ||||||||||| ||     |||||||||||||||||||||||||||||||||| | || |||| |||| || ||||| ||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttagtgct 26084002  T
Q  240 tttcctactcat 251  Q
    ||||||| ||||    
T  26084003 tttcctaatcat 26084014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 45244355 - 45244285
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaatt-ttaacctaatattttccctcca 209  Q
    ||||||||||||||||||| |||||||||||||||  | ||||||||| ||||||||||||||||||||||    
T  45244355 atctttcttactaaagtttgtctggtcaagctattagtaaccctaattcttaacctaatattttccctcca 45244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 42315342 - 42315412
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaatt-ttaacctaatattttccctcca 209  Q
    |||||||||||||||| || | |||||||||||||  | ||||||||| ||||||||||||||||||||||    
T  42315342 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 42315412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 23828343 - 23828413
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaatttt-aacctaatattttccctcca 209  Q
    ||||||||||||| || || | |||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctcca 23828413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 5334312 - 5334421
Alignment:
Q  179 accctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtacttttcctactcattaagctaagttgaatttttgaatttcc 278  Q
    |||||||||||||||||| ||||||||||||||| |||| |||| |||| |  ||| | ||||||||| |||| |   || ||||||  | | |||||||    
T  5334312 accctaattttaacctaagattttccctccatcatccaagcattaaattctctttaatgcttttcctaatcatcactataggttgaaaatctaaatttcc 5334411  T
Q  279 ctcccacaac 288  Q
    ||||||||||    
T  5334412 ctcccacaac 5334421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 26981074 - 26981122
Alignment:
Q  179 accctaattttaacctaatattttccctccatcacccaaacatttaatt 227  Q
    |||||||||||||||||||||||| ||||||||| |||| |||| ||||    
T  26981074 accctaattttaacctaatatttttcctccatcatccaagcattaaatt 26981122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 4966439 - 4966502
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaatt-ttaacctaatattt 201  Q
    |||||| |||| ||||| || |||||||||||||||||| ||||||||| | ||||||||||||    
T  4966439 aatcttacttattaaagcttgtctggtcaagctattgtttaccctaattctaaacctaatattt 4966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 9889020 - 9888957
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaatt-ttaacctaatattt 201  Q
    |||||| |||| ||||| || |||||||||||||||||| ||||||||| | ||||||||||||    
T  9889020 aatcttacttattaaagcttgtctggtcaagctattgtttaccctaattctaaacctaatattt 9888957  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 31981792 - 31981927
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtac 238  Q
    ||||||| ||||||||| || | || |||||| |||||||| |||||||||||||||||||||||||| |||| | ||| |||||||||||  | ||| |    
T  31981792 aatcttttttactaaagcttgtttgatcaagcaattgttcaacctaattttaacctaatattttccctacatc-ctcaagcatttaattttcatgagtgc 31981890  T
Q  239 ttttcctactcattaagctaagttgaatttttgaatt 275  Q
    ||||||||||||  |||||||||| ||||||| ||||    
T  31981891 ttttcctactcagcaagctaagtttaatttttaaatt 31981927  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 9045162 - 9045234
Alignment:
Q  179 accctaattttaacctaatattttccctccatcacccaaacatttaatttttgttagtacttttcctactcat 251  Q
    |||||||||||||||||||||||||||||||||| | ||||||| |||| |  ||||| ||||||||| ||||    
T  9045162 accctaattttaacctaatattttccctccatcatcaaaacattaaattctccttagtgcttttcctaatcat 9045234  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 22780128 - 22780060
Alignment:
Q  141 tctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 210  Q
    |||||||| |||||| || |||| ||||||||||||| |||||||| |||||||||| ||||||||||||    
T  22780128 tctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccat 22780060  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 37337322 - 37337393
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaatttt-aacctaatattttccctcca 209  Q
    ||||||||||||||||| || | ||||||||||||   | ||||||||||| ||||||||||||||||||||    
T  37337322 aatctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 37337393  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 6697934 - 6698007
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatca 212  Q
    ||||||||||||||||  || ||||||||||| ||     ||| ||||||||||||||||||||||||||||||    
T  6697934 aatctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatca 6698007  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 23045483 - 23045554
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctat-tgttcaccctaattttaacctaatattttccctcca 209  Q
    |||||||||| ||||||||| |||| ||||||||| |||| |||  | | ||||||||||||||||||||||    
T  23045483 aatctttctttctaaagtttgtctgatcaagctatatgttaacctgattcttaacctaatattttccctcca 23045554  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 11300834 - 11300764
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaatttt-aacctaatattttccctcca 209  Q
    |||||||||||||||  || |||||| |||||||   | ||||||||||| ||||||||||||||||||||    
T  11300834 atctttcttactaaaacttgtctggtgaagctataagtaaccctaatttttaacctaatattttccctcca 11300764  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 26110688 - 26110758
Alignment:
Q  140 atctttcttactaaagtttatctggtcaagctattgttcaccctaatttt-aacctaatattttccctcca 209  Q
    |||||||||||||||  || | ||||||||||||   | ||||||||||| ||||||||||||||||||||    
T  26110688 atctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 26110758  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 4407816 - 4407864
Alignment:
Q  179 accctaattttaacctaatattttccctccatcacccaaacatttaatt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4407816 accctaattttaacctaatattttccctccatcacccaaacattaaatt 4407864  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 6253382 - 6253472
Alignment:
Q  141 tctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatttttg 231  Q
    ||||||||||||||| || | |  |||||| |||||| | ||||||| ||||||||  |||||||||||||||| ||||||||||||||||    
T  6253382 tctttcttactaaagcttgtttaatcaagcaattgtttaacctaattctaacctaaatttttccctccatcacctaaacatttaatttttg 6253472  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 20077413 - 20077325
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaaacatttaatt 227  Q
    ||||||||||||||||| || | ||||||||| ||     |||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  20077413 aatctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaatt 20077325  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 39742365 - 39742297
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctc 207  Q
    ||||||||||||||||| || | || ||||||||||| | |||||||| ||||||||||||||||||||    
T  39742365 aatctttcttactaaagcttgtttgatcaagctattgataaccctaatcttaacctaatattttccctc 39742297  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 48850725 - 48850795
Alignment:
Q  139 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 210  Q
    |||||||||| |||||| || |||| ||||||||||||| |||||||| |||||||||| ||||||||||||    
T  48850725 aatctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccat 48850795  T

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