View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6196_low_4 (Length: 273)
Name: NF6196_low_4
Description: NF6196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6196_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 28594900 - 28594854
Alignment:
| Q |
199 |
actaatttaaagagtctaatatcatcgcttatttgcaaaaactctct |
245 |
Q |
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| T |
28594900 |
actaatttaaagagtctaatatcatcgtttatttgcaaaaactctct |
28594854 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 28595015 - 28594980
Alignment:
| Q |
122 |
tcaacttttacatcttgtaacaaaaagaaaaaactt |
157 |
Q |
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| T |
28595015 |
tcaacttttacatcttgtaacaaaaagaaaaaactt |
28594980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 28595119 - 28595083
Alignment:
| Q |
18 |
gtttgggaaaacaattatcacatggtcttctttgttc |
54 |
Q |
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| T |
28595119 |
gtttgggaaaacaattatcacatggtctcctttgttc |
28595083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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