View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6197_high_11 (Length: 370)
Name: NF6197_high_11
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 28925486 - 28925302
Alignment:
| Q |
89 |
tattaatagtttataatataaatcagatttattatttatttattgaatgaatctaataactaaattttctcttataatcaaaacaggagtagtaatcata |
188 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28925486 |
tattaattgtttataatataaatcagattcattatttatttaatgaatgaatctaataactaaattttctcttataatcaaaacaggagtagtaatcata |
28925387 |
T |
|
| Q |
189 |
gcatcatgtccccttcgtttcatattaaaaacaatatgtacttttttatcttcacaatttcaacaagaatgaacaagatatttagat |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28925386 |
gcatcatgtccccttcgtttcatattaaaatcaatatgtac--ttttatcttcacaatttcaacaagaatgaacaagatatttagat |
28925302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 28925596 - 28925516
Alignment:
| Q |
10 |
atcacttttttcttagataaatataaattggtaattttgtgtccattactggttgtgtgatgaagcattcatagtaagata |
90 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28925596 |
atcacttttttcttagaaaaatttaaattggtaattttgtgtccattactggttgtgtgatgaagcattcatagtaagata |
28925516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 28925320 - 28925261
Alignment:
| Q |
277 |
atgaacaagatatttacatggaccaattgaacgcaaagaaaaatctttgggcaagtcatg |
336 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28925320 |
atgaacaagatatttagatggaccaattgaaggcaaagaaaaatctttgggcaagtcatg |
28925261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 52168458 - 52168498
Alignment:
| Q |
126 |
atttattgaatgaatctaataactaaattttctcttataat |
166 |
Q |
| |
|
||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
52168458 |
atttattgaatgaatcttaaaagtaaattttctcttataat |
52168498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 43714136 - 43714176
Alignment:
| Q |
126 |
atttattgaatgaatctaataactaaattttctcttataat |
166 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
43714136 |
atttattgaatgaatctaaaaagtgaattttctcttataat |
43714176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University