View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_high_12 (Length: 358)
Name: NF6197_high_12
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 31 - 348
Target Start/End: Original strand, 2230903 - 2231212
Alignment:
| Q |
31 |
ataataatgattaatatgtgtggattccatacatattaattctcttttcaccaaagaaaagataattaattcataatttatttcatggacattgaaccag |
130 |
Q |
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| T |
2230903 |
ataataatgattaatatgtgtggatt--------attaattctcttttcaccaaagaaaagataattaattcatgatttatttcatggacattgaaccag |
2230994 |
T |
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| Q |
131 |
ccatacatgaacaaattatagcttatcaataaagtgaacaaaattctagcctggtttatttatttatttatctatataattcttgtagtgaatacattca |
230 |
Q |
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| T |
2230995 |
ccatacatgaacaaattatagcttatcaataaagtgaacaaaattctagcttggtttatttatttatttatctatataattcttgtagtgaatacattca |
2231094 |
T |
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| Q |
231 |
gcatgcatgagaacaaatgcatcttagatgctggcaagaaccactgattgaattttctttggtaacgcagataatgtaacatagtttgtctccaattaga |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231095 |
gcatgcatgagaacaaatgcatcttagatgctggcaagaaccactgattgaattttctttggtaacgcagataatgtaacatagtttgtctccaattaga |
2231194 |
T |
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| Q |
331 |
ccaagacattcgcctatg |
348 |
Q |
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|||||||||| ||||||| |
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| T |
2231195 |
ccaagacattggcctatg |
2231212 |
T |
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