View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_high_16 (Length: 336)
Name: NF6197_high_16
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 127 - 318
Target Start/End: Original strand, 34667923 - 34668114
Alignment:
| Q |
127 |
acggcatgtagataccatggagaatttcgggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtc |
226 |
Q |
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| T |
34667923 |
acggcatgtagataccatggagaatttcgggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtc |
34668022 |
T |
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| Q |
227 |
atcaagttcagagccctaaacaaaataataaataacacataatgcaactgaaacgaggaaaaatgattttatgttaaatgaaaatagattca |
318 |
Q |
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| T |
34668023 |
atcaagttcagagccctaaacaaaataataaataacacataatgcaactgaaacgaggaaaaatgattttatgttaaatgaaaatagattca |
34668114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34667797 - 34667862
Alignment:
| Q |
1 |
cgtcacgacttgccaagtgcctcttcctttgaagctcctttacaccgtcgtcggctataatagagt |
66 |
Q |
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| T |
34667797 |
cgtcacgacttgccaagtgcctcttcctttgaagctcctttacaccgtcgtctgctataatagagt |
34667862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 127 - 318
Target Start/End: Original strand, 26961723 - 26961914
Alignment:
| Q |
127 |
acggcatgtagataccatggagaatttcgggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtc |
226 |
Q |
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| T |
26961723 |
acggcatgtagataccttggagaatttcaggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtc |
26961822 |
T |
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| Q |
227 |
atcaagttcagagccctaaacaaaataataaataacacataatgcaactgaaacgaggaaaaatgattttatgttaaatgaaaatagattca |
318 |
Q |
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| T |
26961823 |
atcaagttcagagccctaaacaaaataataaataacacataatgcaactgaaacgaggaaaaatgattttatgttaaatgaaaatagattca |
26961914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 26850843 - 26850973
Alignment:
| Q |
127 |
acggcatgtagataccatggagaatttcgggcttttttggcaacgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtc |
226 |
Q |
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|||||||||||||||| |||||| ||| ||||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26850843 |
acggcatgtagataccggggagaagttcaggcttttgtggcaatgggaaattgtcctcaacaaattttagtagcaactcacgaggtccagaaataaagtc |
26850942 |
T |
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| Q |
227 |
atcaagttcagagccctaaacaaaataataa |
257 |
Q |
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| T |
26850943 |
atcaaattcagagccctacccaaaacaataa |
26850973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26961597 - 26961662
Alignment:
| Q |
1 |
cgtcacgacttgccaagtgcctcttcctttgaagctcctttacaccgtcgtcggctataatagagt |
66 |
Q |
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| T |
26961597 |
cgtcacgacttgccaagtgcctcttcctttgaagctccttcacaccgtcgtctgctataatagagt |
26961662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 26850719 - 26850761
Alignment:
| Q |
7 |
gacttgccaagtgcctcttcctttgaagctcctttacaccgtc |
49 |
Q |
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| T |
26850719 |
gacttgccaagtgcctcttcctttgaagctcctttactccgtc |
26850761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 18465753 - 18465826
Alignment:
| Q |
170 |
cgggaaattgtcttcaacaaattttagcagcaactcacgaggtccagaaataaagtcatcaagttcagagccct |
243 |
Q |
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|||| |||| ||||| |||||||| |||||||| || ||||||||||||| |||||||||||||||||| |||| |
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| T |
18465753 |
cgggtaattttcttccacaaatttaagcagcaattcccgaggtccagaaacaaagtcatcaagttcagaaccct |
18465826 |
T |
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