View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_high_25 (Length: 285)
Name: NF6197_high_25
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 29793071 - 29793337
Alignment:
| Q |
1 |
aatatggtattgaatgattttggttttatacaattttttatgaacaaaagactattttagttattaaaataatttgtatgcgagacnnnnnnnttgtgtt |
100 |
Q |
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| T |
29793071 |
aatatggtattgaatgattttggttttatacaattttttatgaacaaaagactattttagtgtttaaaataatttgtatgcgagacaaaaaaattgtgtt |
29793170 |
T |
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| Q |
101 |
gt--aatataatgagaaccaagaatttcaatttttatcatattttctgcctacaatttatcttgtctttgaaacatttgtacaaatcaaacaaattgaaa |
198 |
Q |
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| T |
29793171 |
gtgatatataatgagaaccaagaatttcaatttttatcatattttttacctacaatttatcttgtctttgaaacatttgtacaaatcaaacaaattgaaa |
29793270 |
T |
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| Q |
199 |
tagtcatgtcatgtctttcttattttttaatagatcaaatgatttgaactaatagcctataattcat |
265 |
Q |
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| T |
29793271 |
ttgtcatgttatgtctttcatattttttaatagatcaaatgatttaaactaatagcctataattcat |
29793337 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 39792895 - 39792968
Alignment:
| Q |
117 |
caagaatttcaatttttatcatattttctgcctacaatttatcttgtctttgaaacatttgtacaaatcaaaca |
190 |
Q |
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| T |
39792895 |
caagaatttcaatttttgtcatatcttttgtctccaatttatcttgtccctaaaacagttttgcaaatcaaaca |
39792968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 8222875 - 8222815
Alignment:
| Q |
18 |
ttttggttttatacaattttttatgaacaaaagactattttagttattaaaataatttgta |
78 |
Q |
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| T |
8222875 |
ttttgattttatacaattttttatggacaaaaaattattttagtaatttagataaattgta |
8222815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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