View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6197_high_31 (Length: 249)
Name: NF6197_high_31
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_high_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 12323373 - 12323133
Alignment:
| Q |
4 |
gtccaataatattcgatagtcagtgaggcatatagcgaatttggaaatat----ggatcttttt-gtctacatatggggccttttttgtttataaaaact |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
12323373 |
gtccaataatattcgatagtcagtgaggcatacagcaaatttggaaatatatatggatcttttttgtctacat--ggggccttttttgtttataaaaact |
12323276 |
T |
|
| Q |
99 |
aatgaacaataaattttcgttggtaggcttaaaactagggttttaatagccttacccttaagtcgatcctaaagttagaatagccttgtgatatcttata |
198 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||| || |||||| |||||| |
|
|
| T |
12323275 |
aatgaacaataaattttcattggtggacttaaaattaggattttagtagccttacccttaggtcgatcctaaagttagaatagactcgtgataacttata |
12323176 |
T |
|
| Q |
199 |
taaacatccttaagtaaagcacgagtaaattgtaaatatataa |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12323175 |
taaacatccttaagtaaagcacgagtaaattgtaaatatataa |
12323133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 47442428 - 47442530
Alignment:
| Q |
58 |
ctttttgtctacatatggggccttttttgtttataaaaactaatgaacaataaattttcgttggtaggcttaaaactagggttttaatagccttaccctt |
157 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||||||||| || || ||||||||| |||||| | | |||| ||| || |||| | ||||||||||| |
|
|
| T |
47442428 |
ctttgtgtctgcatatggggccttttttctttataaaaacgaaagacagataaatttttgttggtggacctaaagctatggctttagtggccttaccctt |
47442527 |
T |
|
| Q |
158 |
aag |
160 |
Q |
| |
|
||| |
|
|
| T |
47442528 |
aag |
47442530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 40745301 - 40745228
Alignment:
| Q |
79 |
cttttttgtttataaaaactaatgaacaataaattttcgttggtaggcttaaaactagggttttaatagcctta |
152 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||| ||||| |||| |||||| || |||||| |||||||| |
|
|
| T |
40745301 |
cttttttgtttataaaatctaatgaaaaatatttttttgttggaaggcctaaaacgagagttttagtagcctta |
40745228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 39104105 - 39104180
Alignment:
| Q |
81 |
tttttgtttataaaaactaatgaacaataaattttcgttggtaggcttaaaactagggttttaatagccttaccctt |
157 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||| |||||||||| |||| | |||| |||| ||||||||||||| |
|
|
| T |
39104105 |
tttttgtttataaaatataatgaaaaatatttttt-gttggtaggcctaaagcgagggctttagtagccttaccctt |
39104180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University