View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6197_high_33 (Length: 241)

Name: NF6197_high_33
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6197_high_33
NF6197_high_33
[»] chr4 (5 HSPs)
chr4 (1-224)||(7607069-7607292)
chr4 (5-224)||(7629458-7629677)
chr4 (5-224)||(7637904-7638123)
chr4 (5-220)||(7616069-7616284)
chr4 (5-184)||(7655243-7655422)
[»] chr7 (3 HSPs)
chr7 (8-224)||(8935164-8935380)
chr7 (8-224)||(8934223-8934439)
chr7 (8-88)||(8929904-8929984)
[»] chr6 (1 HSPs)
chr6 (36-168)||(6501375-6501507)
[»] chr3 (2 HSPs)
chr3 (26-223)||(40146453-40146650)
chr3 (90-166)||(40409501-40409577)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7607069 - 7607292
Alignment:
Q  1 ttccaggatgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7607069 ttccaggatgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctcta 7607168  T
Q  101 tgttccgttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7607169 tgttccgttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggat 7607268  T
Q  201 gatgataaagaaggccctttttgt 224  Q
    ||||||||||||||||||||||||    
T  7607269 gatgataaagaaggccctttttgt 7607292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 7629458 - 7629677
Alignment:
Q  5 aggatgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgtt 104  Q
    |||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||  | ||||    
T  7629458 aggatgtcagcaacacaagtattctcggctgcagcgtggataaagagtacacctgcattgttgcatataacagaacacgagacagtattgtccttgtgtt 7629557  T
Q  105 ccgttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggatgatg 204  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||  |    
T  7629558 ccgttatttcaagacggccagcaagaggttgaaaaaaggaaagggcagaggatagagagtgtctcagccgttggatttgggttgctacaaccggatggcg 7629657  T
Q  205 ataaagaaggccctttttgt 224  Q
    ||||||||||||||||||||    
T  7629658 ataaagaaggccctttttgt 7629677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 7637904 - 7638123
Alignment:
Q  5 aggatgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgtt 104  Q
    |||||||| ||||||| | ||||||||||| | || |||| |||||||||||||||||| ||||||||||||||||| || ||| |||||||||| ||||    
T  7637904 aggatgtctgcaacacaagtattctctgctgcggcatggacaaagagtacacctgcattgttgcatataacggaacacgaaacagtgttgtctctgtgtt 7638003  T
Q  105 ccgttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggatgatg 204  Q
    |||||||||  || ||||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||| | || || ||||||||  |    
T  7638004 ccgttattttgagacggccggcaagaggttggaaaaaggcaagggctgaggacagagagtgtctcagccgttggatttggttagctacaaccggatggcg 7638103  T
Q  205 ataaagaaggccctttttgt 224  Q
    ||||||||||||||||||||    
T  7638104 ataaagaaggccctttttgt 7638123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 7616069 - 7616284
Alignment:
Q  5 aggatgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgtt 104  Q
    |||||||||||||||| | ||||||| ||| |||| ||||||||||||||||||||||| ||||||||||| ||||| |||||  |||||||  | || |    
T  7616069 aggatgtcagcaacacaagtattctcagctgcagcatggataaagagtacacctgcattgttgcatataacagaacacgagacggtgttgtcattgtgct 7616168  T
Q  105 ccgttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggatgatg 204  Q
    |||||||||  || ||||||| ||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||| | ||  | || ||||| ||    
T  7616169 ccgttattttgagacggccggaaagaggttggaaaaaggcaagggcagaggacaaagagtgtctcagccgttggatttggttagcttcaactggatggtg 7616268  T
Q  205 ataaagaaggcccttt 220  Q
    ||||||||| ||||||    
T  7616269 ataaagaagacccttt 7616284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 7655422 - 7655243
Alignment:
Q  5 aggatgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgtt 104  Q
    |||||||||||||||| | ||| ||  ||| |||| || ||||||  ||||||||||||||||||| | || ||||| ||||||||| |||||   ||||    
T  7655422 aggatgtcagcaacacaagtatccttggctgcagcatgtataaagtttacacctgcattattgcatgttacagaacacgagacaatgctgtcttcgtgtt 7655323  T
Q  105 ccgttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgg 184  Q
    | || ||||  || || ||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||| ||||||    
T  7655322 ctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggctgaggataaagagtgtgtcagccgttgaatttgg 7655243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 8935380 - 8935164
Alignment:
Q  8 atgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgttccg 107  Q
    ||||||||||||| | ||||||||| |   || |||| |||||||||||||||||| |||||||||||||| || |||||| | ||||||   | |||||    
T  8935380 atgtcagcaacacaagtattctctgatctggcatggacaaagagtacacctgcattgttgcatataacggagcacgagacagttttgtcttggtattccg 8935281  T
Q  108 ttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggatgatgata 207  Q
    ||||||  || ||||||||||||||||||||||||| |||||  || |||||||||||||||| ||||||||||||| | |  || |||||||| |||||    
T  8935280 ttattttgagacggccggcaagaggttggaaaaaggcaagggttgaagatagagagtgtctcagccgttggatttggttagatacaaccggatggtgata 8935181  T
Q  208 aagaaggccctttttgt 224  Q
    || ||||||||||||||    
T  8935180 aaaaaggccctttttgt 8935164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 8934439 - 8934223
Alignment:
Q  8 atgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgttccg 107  Q
    ||||||||||||| | ||||||||| |   || |||| |||||||||| ||||||| |||||||||||||| || |||||| | ||||||   | |||||    
T  8934439 atgtcagcaacacaagtattctctgatctggcatggacaaagagtacatctgcattgttgcatataacggagcacgagacagttttgtcttggtattccg 8934340  T
Q  108 ttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggatgatgata 207  Q
    ||||||  || || ||| |||||||||||||||||| |||||  || |||||||||||||| | | ||||||||||| | |  || |||||||| | |||    
T  8934339 ttattttgagacgaccgacaagaggttggaaaaaggcaagggttgaagatagagagtgtcttagctgttggatttggttagatacaaccggatggtaata 8934240  T
Q  208 aagaaggccctttttgt 224  Q
    |||||||||||||||||    
T  8934239 aagaaggccctttttgt 8934223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 8929984 - 8929904
Alignment:
Q  8 atgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagaca 88  Q
    ||||||||||||| | ||||||||| |   || || | |||||||||| ||||||| |||||||||||||| || ||||||    
T  8929984 atgtcagcaacacaagtattctctgatctggcatgaacaaagagtacaactgcattgttgcatataacggagcacgagaca 8929904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 6501375 - 6501507
Alignment:
Q  36 cagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgttccgttatttcaaggcggccggcaagaggttg 135  Q
    ||||||||| |||||||||||||||||| |||||| | | ||||||||| ||| ||||||||   | |||||| ||||  || ||||| ||||| |||||    
T  6501375 cagcgtggacaaagagtacacctgcattgttgcatgtgatggaacatgaaacattgttgtcttcgttttccgtcattttgagacggcccgcaagtggttg 6501474  T
Q  136 gaaaaaggaaagggcagaggatagagagtgtct 168  Q
    |||||||| |||| ||||||||| |||||||||    
T  6501475 gaaaaaggcaaggacagaggataaagagtgtct 6501507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 40146650 - 40146453
Alignment:
Q  26 ttctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgttccgttatttcaaggcggccgg 125  Q
    ||||||||  |||| |||| ||||||  | |||||||| |||||| | ||||||||||| ||  |||||||  | || || |||||||| || ||||| |    
T  40146650 ttctctgccgcagcatggacaaagagcgcgcctgcattgttgcatgtgacggaacatgaaacggtgttgtccttgtgatctgttatttctagacggcctg 40146551  T
Q  126 caagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggatgatgataaagaaggccctttttg 223  Q
    |||| ||| ||||||||| ||||| ||| |||||||||||| |||   |||| |||||| |||  || |  ||||| ||||||||||| |||||||||    
T  40146550 caagtggtgggaaaaaggcaagggtagaagatagagagtgtttcagatgttgaatttggtttggcactagaggatggtgataaagaagaccctttttg 40146453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 40409577 - 40409501
Alignment:
Q  90 tgttgtctctatgttccgttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgt 166  Q
    |||||||| |||| || ||| | || || ||||| ||||| ||| ||||||||| ||||||||||||||||||||||    
T  40409577 tgttgtctttatggtctgttctctctagacggcctgcaagtggtgggaaaaaggcaagggcagaggatagagagtgt 40409501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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