View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_high_38 (Length: 234)
Name: NF6197_high_38
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_high_38 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 3655250 - 3655023
Alignment:
| Q |
7 |
atatcatattattcaaacaatgtattttatcagaaaagaaaaacaaaactatattttatattttcttttgacacttgatacaaatatcaaaggctttcat |
106 |
Q |
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| T |
3655250 |
atatcatattattcaaacaatatattttatcagaaaagaaaaaaaaaactatattttatattttcttttgacacttgatacaaatatcaaaggctttcat |
3655151 |
T |
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| Q |
107 |
aaagctccaatgggagacgtggttggagcataacatcaagtggattttccttaggcaatgccaatcctactccttcaatcatatcaactggaccaccatc |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3655150 |
aaagttccaatgggagacgtggttggagcataacatcaagtggattttccttaggcaatgccaatcctactccttcaatcatatcaactggaccaccatc |
3655051 |
T |
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| Q |
207 |
ttttgtgtttatatcaaacccttgaatc |
234 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3655050 |
ttttgtgtttatatcaaacccttgaatc |
3655023 |
T |
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