View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_high_4 (Length: 584)
Name: NF6197_high_4
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 10306557 - 10307124
Alignment:
| Q |
1 |
cctttcaatactattgattttgcaaatagggttttgtgttttttcatgcttgtttcgattaccggattggttggaattggaattgttgttgctagagcta |
100 |
Q |
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| T |
10306557 |
cctttcaacactattgattttgcaaatagggttttgtgttttttcatgcttgtttcgataaccggattggttggaattggaattgttgttgctagagcta |
10306656 |
T |
|
| Q |
101 |
atataataagctcttttggttcaatttcatggaaattttcgtcgattttgccgattataccggttgctgtgttaacattagggtttcatgtgattactcc |
200 |
Q |
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| T |
10306657 |
atataataagctcttttgcttcaatttcatggaaattttcgtcgattttgccgattataccggttgctgtgttaacattagggtttcatgtgattactcc |
10306756 |
T |
|
| Q |
201 |
ttttatatgtaaaattgctggtaatactattgatgaagcaagaaaagcaatactaatcggcggtgttgttcctttggtaatggttctgtcatggaatttg |
300 |
Q |
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| T |
10306757 |
ttttatatgtaaaattgctggtaatactattgatgaagcaagaaaagcaatactgatcggcggtgttgttcctttggtaatggttctgtcatggaatttg |
10306856 |
T |
|
| Q |
301 |
atagtgttgggacttgttggagctaataaaggtccagactttgttggtgatcctattacccttttgctttctgtgaatccttctgctttatctgctgttc |
400 |
Q |
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| T |
10306857 |
atagtgttgggacttgttggagctaataaaggtccagactttgttggtgatcctattacccttttgctttctgtgaatccttctgctttatctgctgttc |
10306956 |
T |
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| Q |
401 |
aagtatttgctttttcggctatggcgactagtttgatcggttatgctgtgagtttgcctaaacagattcttgatactttggaattggtatctggaaaagg |
500 |
Q |
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| T |
10306957 |
aaggatttgctttttcggctatggcgaccagtttgatcggttatgctgtgagtttgcctaaacagattcttgatactttggaattggtatctggaaaagg |
10307056 |
T |
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| Q |
501 |
tgatgataatgagtatggaaagggaagagttggatcggttttctatggtggcaacggcggtgatggtg |
568 |
Q |
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| T |
10307057 |
tgatgataatgagtatggaaagggaagagttggatcagttttctatggtggcaacggcggtgatggtg |
10307124 |
T |
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