View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6197_low_10 (Length: 376)

Name: NF6197_low_10
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6197_low_10
NF6197_low_10
[»] chr2 (22 HSPs)
chr2 (10-355)||(39129596-39129941)
chr2 (25-355)||(39495157-39495487)
chr2 (29-350)||(39427325-39427631)
chr2 (10-161)||(39123635-39123786)
chr2 (119-314)||(39602252-39602447)
chr2 (25-156)||(39458337-39458468)
chr2 (168-325)||(39398795-39398952)
chr2 (10-125)||(39152011-39152126)
chr2 (10-156)||(39136394-39136540)
chr2 (133-274)||(39369526-39369667)
chr2 (143-304)||(39381878-39382039)
chr2 (168-325)||(39478961-39479118)
chr2 (119-312)||(39220423-39220616)
chr2 (10-111)||(39422347-39422448)
chr2 (168-325)||(39467279-39467436)
chr2 (168-317)||(44895988-44896137)
chr2 (119-327)||(39450760-39450968)
chr2 (19-94)||(39488065-39488140)
chr2 (10-60)||(39474186-39474236)
chr2 (182-274)||(39391508-39391600)
chr2 (143-274)||(39199177-39199308)
chr2 (25-125)||(39416213-39416313)
[»] chr6 (1 HSPs)
chr6 (168-325)||(16112599-16112756)
[»] chr7 (1 HSPs)
chr7 (35-125)||(19806780-19806870)
[»] chr5 (1 HSPs)
chr5 (182-270)||(33559761-33559849)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 39129596 - 39129941
Alignment:
Q  10 aagaatatccaggggaaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaag 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39129596 aagaaaatccaggggaaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaacgaag 39129695  T
Q  110 aagtaaagacaaaagaaacaaaacttcgtccactcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129696 aagtaaagacaaaagaaacaaaacttcgtccactcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatat 39129795  T
Q  210 tgctcagtgtactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaaggaag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129796 tgctcagtgtactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaaggaag 39129895  T
Q  310 aagttactcaaggtaacccaattgagtaagaatgatccacatgctc 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39129896 aagttactcaaggtaacccaattgagtaagaatgatccacatgctc 39129941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 25 - 355
Target Start/End: Complemental strand, 39495487 - 39495157
Alignment:
Q  25 aaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaagaagtaaagacaaaag 124  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||  ||||||||| |||||| ||| ||||| | ||||||||||    
T  39495487 aaaattgaagaatgcgtcaaggattttgcagcaaagcaagcacagctctgtttgatggatgacttgattggagagcgcaagcaagaactcaagacaaaag 39495388  T
Q  125 aaacaaaacttcgtccactcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgt 224  Q
    ||||| ||||||||||| |||||||||||  ||||||  ||| |||| ||||| ||||||||||||| | |||||||||||| |||||||| ||| ||||    
T  39495387 aaacagaacttcgtccagtcatggataacggtgataaggtctgtgaagggaaggaacaggaactcaaagctctttcccaaaaaattgctcaatgttctgt 39495288  T
Q  225 ggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaaggaagaagttactcaaggta 324  Q
    |||||| |||  ||||||||||||| ||||| ||||||| ||| ||||||||  |||||| |||  | ||||||  |||||||  |||||||| | | ||    
T  39495287 ggaacttaaggccaaagagaaagagtgtgatacaatgaaaaaactaattgacgaacaagctgaacgattagagttggaaaggataaagttacttaggata 39495188  T
Q  325 acccaattgagtaagaatgatccacatgctc 355  Q
    |  ||||| |||||||||||||||| |||||    
T  39495187 atgcaattaagtaagaatgatccacgtgctc 39495157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 350
Target Start/End: Complemental strand, 39427631 - 39427325
Alignment:
Q  29 ttgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaagaagtaaagacaaaagaaac 128  Q
    |||| |||||||||||||||||||  |||||| ||||||| || ||||||||| |  ||||||||| |||||| ||| | ||| | |  |||||||||||    
T  39427631 ttgatgaatgtgtcaaggattttgatgcaaagaaagcacagctctgtttgatgaatgacttgattggagagcgcaagcaggaactcagaacaaaagaaac 39427532  T
Q  129 aaaacttcgtccactcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgtggaa 228  Q
    | ||||||||| | ||| |||||||||||| ||       ||||||||         |||| |   |||||||| ||| |||||| | ||||||||||||    
T  39427531 agaacttcgtcaagtcaaggataacattgacaag------gaaaggaa---------actcgacactctttcccgaaaaattgctgaatgtactgtggaa 39427447  T
Q  229 ctcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaaggaagaagttactcaaggtaaccc 328  Q
    || ||||  |||||||||||||||||||| ||||| |||  |||||||  ||||||||||| | || | || ||||||||||||||||| |||||||  |    
T  39427446 cttaagactaaagagaaagagcgtgatgcgatgaaaaaacaaattgacgaacaagcagaaagattaaaatcagaaaggaagaagttactgaaggtaattc 39427347  T
Q  329 aattgagtaagaatgatccaca 350  Q
    |||| |||||||||||||||||    
T  39427346 aattaagtaagaatgatccaca 39427325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 39123635 - 39123786
Alignment:
Q  10 aagaatatccaggggaaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaag 109  Q
    ||||| || ||||| |||| |||||||| |||||||||||||   | ||||||||||||||| | |||||||||| || |||||| |||||| ||| |||    
T  39123635 aagaaaatgcagggaaaaactgaagaatttgtcaaggattttcttgtaaagcaagcacaactctctttgatggacgacatgattggagagcgcaagaaag 39123734  T
Q  110 aagtaaagacaaaagaaacaaaacttcgtccactcatggataacattgataa 161  Q
    || | ||||||||||||||| ||||| ||| | |||||||||||||||||||    
T  39123735 aactgaagacaaaagaaacagaactttgtcaaatcatggataacattgataa 39123786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 119 - 314
Target Start/End: Original strand, 39602252 - 39602447
Alignment:
Q  119 caaaagaaacaaaacttcgtccactcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtg 218  Q
    ||||||||| | ||||||||| | |||| ||||||||||||||   |  |||||||||| || |||||||||||| |||||||||||| |||||| | |     
T  39602252 caaaagaaatagaacttcgtcgagtcattgataacattgataaggaccgtgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatt 39602351  T
Q  219 tactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaaggaagaagtt 314  Q
    |||| ||||||| |||  |||||||| ||||| |||||||||||| | ||||||||   | |||||||||| | |||||||  |||||||||||||    
T  39602352 tactttggaacttaaggccaaagagatagagcttgatgcaatgaacagattaattggtgggcaagcagaaaaattagagtccaaaaggaagaagtt 39602447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 39458337 - 39458468
Alignment:
Q  25 aaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaagaagtaaagacaaaag 124  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||| | |||||||||  ||||||||| |||||| ||| ||||| | ||||||||||    
T  39458337 aaaattgaaaaatgtgtcgaggattttgcagcaaaggaagcacaactctatttgatggaagacttgattggagagcgcaagcaagaactcaagacaaaag 39458436  T
Q  125 aaacaaaacttcgtccactcatggataacatt 156  Q
    | | | |||||| || | ||| ||||||||||    
T  39458437 agatagaacttcatcaagtcaaggataacatt 39458468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 325
Target Start/End: Complemental strand, 39398952 - 39398795
Alignment:
Q  168 tgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaa 267  Q
    |||||||||| || |||||||||||| |||| |||||||  ||||  | |||| | |||||||  ||  |||||||||||||| |||||||||||| | |    
T  39398952 tgaaaggaaggaagaggaactcaaggctcttgcccaaaaagttgccgaatgtaatatggaactagagtccaaagagaaagagcttgatgcaatgaaaata 39398853  T
Q  268 ttaattgacagacaagcagaaatactagagtctgaaaggaagaagttactcaaggtaa 325  Q
    ||| ||  | |||||||||||||  ||||||| ||||||||||||||||| |||||||    
T  39398852 ttagttagcggacaagcagaaattttagagtcggaaaggaagaagttactaaaggtaa 39398795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 39152011 - 39152126
Alignment:
Q  10 aagaatatccaggggaaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaag 109  Q
    ||||| || |||||||||||||| ||||||||||||||||||| ||||||| |||  || || | |||||||||  ||||||||| |||||| ||| |||    
T  39152011 aagaaaatgcaggggaaaattgatgaatgtgtcaaggattttgtagcaaaggaagggcagctctatttgatggaggacttgattggagagcgcaagcaag 39152110  T
Q  110 aagtaaagacaaaaga 125  Q
    || | |||||||||||    
T  39152111 aactcaagacaaaaga 39152126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 39136394 - 39136540
Alignment:
Q  10 aagaatatccaggggaaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaag 109  Q
    ||||| || ||||| |||||||| ||||||||||||||||||| ||||||| |||  || ||  ||||||||||  ||||||||| |||||  ||| |||    
T  39136394 aagaaaatgcagggaaaaattgacgaatgtgtcaaggattttgtagcaaaggaagggcagctcggtttgatggaggacttgattggagagcacaagaaag 39136493  T
Q  110 aagtaaagacaaaagaaacaaaacttcgtccactcatggataacatt 156  Q
    || |||||||||||||     ||||||||| | ||||||||||||||    
T  39136494 aactaaagacaaaagagttggaacttcgtcaagtcatggataacatt 39136540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 39369526 - 39369667
Alignment:
Q  133 cttcgtccactcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactca 232  Q
    ||||||| | |||| ||||||||||||||  || ||||||||||| || |||||||||||| |||||||||||| |||||| |   |||||||||| | |    
T  39369526 cttcgtcaagtcattgataacattgataaggtccatgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaaattactgtggaattta 39369625  T
Q  233 agagcaaagagaaagagcgtgatgcaatgaagaaattaattg 274  Q
     |  |||||||| ||||| ||||||| |||| || |||||||    
T  39369626 tggccaaagagatagagcttgatgcagtgaataacttaattg 39369667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 304
Target Start/End: Complemental strand, 39382039 - 39381878
Alignment:
Q  143 tcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactcaagagcaaaga 242  Q
    |||| ||||||||||||||   |  |||||||||| || |||||||||||| |||||||||| | |||||| | | || | ||||||| |||  ||||||    
T  39382039 tcattgataacattgataaggaccgtgaaaggaaggaagaggaactcaaggctctttcccaacaaattgctgaatttattttggaacttaaggccaaaga 39381940  T
Q  243 gaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaa 304  Q
    || ||||| |||| ||||||| || ||||||| || |||||| |||| | ||||||||||||    
T  39381939 gatagagcttgatacaatgaacaagttaattggcacacaagcggaaaaattagagtctgaaa 39381878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 325
Target Start/End: Complemental strand, 39479118 - 39478961
Alignment:
Q  168 tgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaa 267  Q
    |||||||||| || |||||||||||| |||| || | ||  || || | |||| | ||||||| |||| ||| ||| |||||| |||||||||||| | |    
T  39479118 tgaaaggaaggaagaggaactcaaggctcttaccgagaaagtttctgaatgtaatctggaacttaagaccaacgagcaagagcttgatgcaatgaaaata 39479019  T
Q  268 ttaattgacagacaagcagaaatactagagtctgaaaggaagaagttactcaaggtaa 325  Q
    | ||||  | |||||||||||||| |||||||| ||||||||||| |||| |||||||    
T  39479018 tcaattagcggacaagcagaaatattagagtcttaaaggaagaaggtactaaaggtaa 39478961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 312
Target Start/End: Original strand, 39220423 - 39220616
Alignment:
Q  119 caaaagaaacaaaacttcgtccactcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtg 218  Q
    ||||||||| | ||||||||| | |||| ||||||||||||||   | ||||||||||| || ||||| |||||| |||||||||||| |||||| |       
T  39220423 caaaagaaatagaacttcgtcaagtcattgataacattgataaggaccatgaaaggaaggaagaggaaatcaaggctctttcccaaaaaattgctgaact 39220522  T
Q  219 tactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaaggaagaag 312  Q
    | || ||||    |||  ||||||||| |||| ||||||| |||| ||||||||||    |||||||||||   |||| |||||||||||||||    
T  39220523 tgctttggactgtaaggccaaagagaacgagcttgatgcagtgaacaaattaattggtgaacaagcagaaaagttagaatctgaaaggaagaag 39220616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 39422448 - 39422347
Alignment:
Q  10 aagaatatccaggggaaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaag 109  Q
    ||||| || |||||||||||||||||||||||| |||| || | ||||||| || |||| || | ||||||||| |||||||||| |||||| ||| |||    
T  39422448 aagaaaatgcaggggaaaattgaagaatgtgtcgaggaattcgtagcaaaggaatcacagctctctttgatggaaaacttgattggagagcgcaagcaag 39422349  T
Q  110 aa 111  Q
    ||    
T  39422348 aa 39422347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 325
Target Start/End: Original strand, 39467279 - 39467436
Alignment:
Q  168 tgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaa 267  Q
    |||||| ||| || ||| |||||||| |||| | |||||  ||||| | |||| | |||||||  ||  |||||||||||||| |||| ||||||| | |    
T  39467279 tgaaagtaaggaagagggactcaaggctcttactcaaaaagttgctaaatgtaatatggaacttgagtccaaagagaaagagcttgattcaatgaaaata 39467378  T
Q  268 ttaattgacagacaagcagaaatactagagtctgaaaggaagaagttactcaaggtaa 325  Q
     |  ||  |||||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  39467379 ctggttagcagacaagcagaaatattagagtccgaaaggaagaagttactaaaggtaa 39467436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 317
Target Start/End: Complemental strand, 44896137 - 44895988
Alignment:
Q  168 tgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaa 267  Q
    |||||||||| || || ||||||||| |||||||||||| |||| | | |||||| ||||||| |||  |||||||||||| | |||||| ||| |||||    
T  44896137 tgaaaggaaggaagagcaactcaaggctctttcccaaaaaattgatgaatgtactatggaacttaaggccaaagagaaagaccttgatgctatggagaaa 44896038  T
Q  268 ttaattgacagacaagcagaaatactagagtctgaaaggaagaagttact 317  Q
    | | ||| ||  ||||||| ||   || |||| |||||||||||||||||    
T  44896037 tcagttggcatgcaagcagcaaagttacagtcggaaaggaagaagttact 44895988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 327
Target Start/End: Original strand, 39450760 - 39450968
Alignment:
Q  119 caaaagaaacaaaacttcgtccactcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtg 218  Q
    ||||||||| | ||||||||| | |||| | ||||||||||||   |  |||||||||| || |||||||||||| |||||||||||| | |||| | |     
T  39450760 caaaagaaatagaacttcgtcaagtcattgttaacattgataaggaccgtgaaaggaaggaagaggaactcaaggctctttcccaaaaaaatgctgaatt 39450859  T
Q  219 tactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaaggaagaagttactc 318  Q
    |||| |  ||   |||  |||||||| ||| | ||||||| |||| ||| |||||| || |||||| |||| | |||||||||||| ||| ||||| ||     
T  39450860 tacttttaaatgtaaggccaaagagatagaacttgatgcattgaacaaactaattggcaaacaagctgaaaaattagagtctgaaaagaacaagttgctg 39450959  T
Q  319 aaggtaacc 327  Q
    |||||||||    
T  39450960 aaggtaacc 39450968  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 39488140 - 39488065
Alignment:
Q  19 caggggaaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattg 94  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||| ||| || | |||||||||  |||||||||    
T  39488140 caggggaaaattgaagaatgtgtcaaagattttgtagcaaaggaaggacagctatatttgatggaggacttgattg 39488065  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 39474236 - 39474186
Alignment:
Q  10 aagaatatccaggggaaaattgaagaatgtgtcaaggattttgcagcaaag 60  Q
    ||||| || ||||| |||||||||||||||||||||||||||| |||||||    
T  39474236 aagaaaatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaag 39474186  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 39391600 - 39391508
Alignment:
Q  182 aggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattg 274  Q
    ||||||| |||| |||||||||||| |||| | | ||||||||||||||  ||  |||||||||||| | ||||||||  || ||||||||||    
T  39391600 aggaactgaaggctctttcccaaaaaattgttgaatgtactgtggaacttcaggccaaagagaaagatcttgatgcaacaaacaaattaattg 39391508  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 39199308 - 39199177
Alignment:
Q  143 tcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactcaagagcaaaga 242  Q
    |||| ||||||||||||||   |  |||||||||| || |||||||||||| |||||||||| | |||||| | | |||| |||||   |||  |||| |    
T  39199308 tcattgataacattgataaggaccgtgaaaggaaggaagaggaactcaaggctctttcccaacaaattgctgaatttactttggaatataaggccaaaca 39199209  T
Q  243 gaaagagcgtgatgcaatgaagaaattaattg 274  Q
    |||||||| || |||| |||| ||||||||||    
T  39199208 gaaagagcttggtgcagtgaacaaattaattg 39199177  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 39416313 - 39416213
Alignment:
Q  25 aaaattgaagaatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaagaagtaaagacaaaag 124  Q
    |||| ||||||||||||||||||||||| ||||||| ||| ||| || | |||| ||||  | ||||||   ||||| ||| ||||| | ||||||||||    
T  39416313 aaaactgaagaatgtgtcaaggattttgtagcaaaggaaggacagctctatttggtggaggaattgattcgggagcgcaagcaagaactcaagacaaaag 39416214  T
Q  125 a 125  Q
    |    
T  39416213 a 39416213  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 325
Target Start/End: Original strand, 16112599 - 16112756
Alignment:
Q  168 tgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaa 267  Q
    |||||| |||||| |||||||||||| ||||  ||||||  ||||  |  ||| | ||||||| |||  ||| |||||||||| |||||||||||| | |    
T  16112599 tgaaagcaagaaagaggaactcaaggctcttaaccaaaaagttgcggaaggtaatctggaacttaagtccaaggagaaagagcttgatgcaatgaaaata 16112698  T
Q  268 ttaattgacagacaagcagaaatactagagtctgaaaggaagaagttactcaaggtaa 325  Q
    | ||||  | ||||||| |||||| ||||||| ||||||||| ||||||| |||||||    
T  16112699 tcaattagcggacaagcggaaatattagagtccgaaaggaagcagttactaaaggtaa 16112756  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 19806780 - 19806870
Alignment:
Q  35 aatgtgtcaaggattttgcagcaaagcaagcacaactttgtttgatggacaacttgattgcagagcggaaggaagaagtaaagacaaaaga 125  Q
    |||||||||||||||||| ||||||| |||  || ||  ||||||||||  ||||||||| |||||| ||| ||||| |||||||||||||    
T  19806780 aatgtgtcaaggattttgtagcaaaggaagggcagctccgtttgatggaggacttgattggagagcgcaagaaagaactaaagacaaaaga 19806870  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 33559761 - 33559849
Alignment:
Q  182 aggaactcaaggatctttcccaaaatattgctcagtgtactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaatta 270  Q
    ||||||||| || ||||||||||||  ||||| | ||||||||||||||  ||  |||||||||||| | |||||| ||||| ||||||    
T  33559761 aggaactcagggctctttcccaaaaggttgctgaatgtactgtggaacttcaggtcaaagagaaagatcttgatgcgatgaacaaatta 33559849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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