View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_14 (Length: 349)
Name: NF6197_low_14
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 78 - 349
Target Start/End: Original strand, 35247927 - 35248197
Alignment:
| Q |
78 |
ctcaattatccatattataaggcaaatgaatagtataatgcaaggagcatcatagaagaaacagttttttgggtaaaatgaataaagaaaaattagcaaa |
177 |
Q |
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| T |
35247927 |
ctcaattatccatattataaggcaaatgaatagtataatgcaaggagcatcaaagaagaaacagtttt-tgggtaaaatgaataaagaaaaattagcaaa |
35248025 |
T |
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| Q |
178 |
agggtgcaaaattaagcataccagggggaatatgtccggtaacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggta |
277 |
Q |
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| T |
35248026 |
agggtgcaaaattaagcataccagggagaatatgtccggaaactcgagcttcatttttgaaaatcttagcagtgtttgacaatcccttcttcttgaagta |
35248125 |
T |
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| Q |
278 |
atcatacagaaagttttgaaaactacaaagaacacacaggattcatattacgaaagaaattgaaagcaagca |
349 |
Q |
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| T |
35248126 |
atcacacagaaagttttgaaaactacaaagaacacacaggattcgtattacgaaagaaaatgaaagaaagca |
35248197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 197 - 349
Target Start/End: Original strand, 35254543 - 35254695
Alignment:
| Q |
197 |
accagggggaatatgtccggtaacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttga |
296 |
Q |
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| T |
35254543 |
accagggggaaaatgtccggtaacatgagcttcatttttgaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttga |
35254642 |
T |
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| Q |
297 |
aaactacaaagaacacacaggattcatattacgaaagaaattgaaagcaagca |
349 |
Q |
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| T |
35254643 |
aaactacaaagaacacacaggattcatattacgaaagaaaatgaaagaaagca |
35254695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 35272626 - 35272724
Alignment:
| Q |
217 |
taacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacacaca |
315 |
Q |
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|||| ||||||||||||| ||||||| ||||| | | ||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
35272626 |
taacttgagcttcattttggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatgcagaaagatttgaaaactacacagaacacaca |
35272724 |
T |
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