View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6197_low_15 (Length: 345)

Name: NF6197_low_15
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6197_low_15
NF6197_low_15
[»] chr4 (6 HSPs)
chr4 (1-338)||(7606593-7606930)
chr4 (1-338)||(7637424-7637761)
chr4 (1-338)||(7615607-7615926)
chr4 (1-332)||(7628984-7629315)
chr4 (12-338)||(7655576-7655899)
chr4 (246-338)||(7633707-7633799)
[»] chr7 (5 HSPs)
chr7 (1-333)||(8910591-8910919)
chr7 (6-338)||(8935531-8935863)
chr7 (6-85)||(8934590-8934669)
chr7 (6-72)||(8930135-8930201)
chr7 (244-338)||(8918826-8918920)
[»] chr3 (3 HSPs)
chr3 (32-215)||(8102956-8103139)
chr3 (10-182)||(40146823-40146992)
chr3 (228-258)||(8102898-8102928)
[»] chr6 (2 HSPs)
chr6 (16-175)||(6501031-6501186)
chr6 (28-56)||(11969547-11969575)
[»] chr8 (1 HSPs)
chr8 (31-149)||(15190642-15190757)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 7606930 - 7606593
Alignment:
Q  1 catgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606930 catgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacac 7606831  T
Q  101 tagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606830 tagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtc 7606731  T
Q  201 taatgaggaaaaactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606730 taatgaggaaaaactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatc 7606631  T
Q  301 aaaataacttctctacaagcgcttttaactcacctttg 338  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7606630 aaaataacttctctacaagcgcttttaactcacctttg 7606593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 7637761 - 7637424
Alignment:
Q  1 catgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  ||||||||  | |||||||||| |||||||||||||    
T  7637761 catgttgtcgttgacggaaagtccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacac 7637662  T
Q  101 tagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtc 200  Q
    ||||||||||||||||||||||| ||||||  || ||||||||||||||||||  ||||||||||||| |||||| ||||  |||||||||||||||||     
T  7637661 tagagcgttggtttccaaatggtgttcaacggcctatacgatttcctttcactttggagcaacaaaatgatcactctgataggttgagtttttcatcgtt 7637562  T
Q  201 taatgaggaaaaactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatc 300  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| | || |||| |    
T  7637561 taatgaggaaaaatattgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacgaagagatcggcaccacc 7637462  T
Q  301 aaaataacttctctacaagcgcttttaactcacctttg 338  Q
    |||||| ||||||||||||| |||||||||||| ||||    
T  7637461 aaaatatcttctctacaagcacttttaactcacgtttg 7637424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 7615926 - 7615607
Alignment:
Q  1 catgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacac 100  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  ||||||||  | |||||||||| |||||||||||||    
T  7615926 catgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacac 7615827  T
Q  101 tagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtc 200  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||||||  |                   || ||||||| ||||||||||| |||||    
T  7615826 tagagcgttggtttccaaatggtgttcaacagcccatacgatttcctttcgttt------------------acggtgatgaattgagtttttcgtcgtc 7615745  T
Q  201 taatgaggaaaaactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatc 300  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||| ||||||||||||||||| ||| |||||||||||    
T  7615744 taatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatc 7615645  T
Q  301 aaaataacttctctacaagcgcttttaactcacctttg 338  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  7615644 aaaatatcttctctacaagtgcttttaactcacctttg 7615607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 7629315 - 7628984
Alignment:
Q  1 catgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacac 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||  | |||||||||| ||||| ||||||     
T  7629315 catgttgttgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacat 7629216  T
Q  101 tagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtc 200  Q
      || |||||||||||||||||||||||||||||||||||||||||||||  |  ||||  | |||| ||||||| ||||  ||||| |  ||| || ||    
T  7629215 ctgaacgttggtttccaaatggtattcaacttcccatacgatttcctttctttttggagttagaaaagaatcactctgataggttgactacttcgtcatc 7629116  T
Q  201 taatgaggaaaaactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatc 300  Q
    |||||| ||||||||||||||||||||||| ||||| || || ||||||||||||||| | ||||||||||| ||||||||  ||||| |||||| ||||    
T  7629115 taatgatgaaaaactttgtttatcaaatagattattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagattggtaacatc 7629016  T
Q  301 aaaataacttctctacaagcgcttttaactca 332  Q
    |||||| ||||||||||||||||| |||||||    
T  7629015 aaaatatcttctctacaagcgcttctaactca 7628984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 7655576 - 7655899
Alignment:
Q  12 tgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttgg 111  Q
    ||||||| |||||  |||||||||||||||||| ||||||||||| ||||| ||||||  |    |||||||||| ||  ||||||| || |||||||||    
T  7655576 tgacggacagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatc---atcaaatatctaactccccaacgctggagcgttgg 7655672  T
Q  112 tttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaa 211  Q
    ||||||||||| |||||||  || |||||||||||||| ||||  |||| |||||| ||||||| ||||| ||| |||||||| || ||| |||| ||||    
T  7655673 tttccaaatggaattcaacgacctatacgatttcctttaactatagagccacaaaagaatcactctgatgggttaagtttttcgtcttctgatgacgaaa 7655772  T
Q  212 aactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaataacttc 311  Q
    |||| | | ||||| | ||| ||||||| || |||||| |||||||||| ||||||||||||||| |||||| |||| ||| |||||  |||||| ||||    
T  7655773 aactctttctatcagagaggatatttcactttacaaagaagaaaatcatgcaactgaaatcgaaagtcaatgcagagattgataccaaaaaaatatcttc 7655872  T
Q  312 tctacaagcgcttttaactcacctttg 338  Q
    ||||||||||||||||||||| |||||    
T  7655873 tctacaagcgcttttaactcatctttg 7655899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 7633799 - 7633707
Alignment:
Q  246 aaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttg 338  Q
    ||||||||||||| ||||||||||||| ||| ||||   |||| |||||||| ||||||||  ||  ||| | ||||||||| ||||||||||    
T  7633799 aaaggagaaaatcttacaactgaaatcaaaagtcaacacagagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttg 7633707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 8910591 - 8910919
Alignment:
Q  1 catgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacac 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||  ||||||||  | |||||||||| |||||||||||||    
T  8910591 catgttgtcgttgacggaaagtccgtgtggcatttcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacac 8910690  T
Q  101 tagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtc 200  Q
    |||||||||||||||||||     ||||||  || ||||||||||||||||||  ||||||||||||  |||||| ||||| ||||||||||||||||      
T  8910691 tagagcgttggtttccaaag----ttcaacggcctatacgatttcctttcactttggagcaacaaaaggatcactctgatgggttgagtttttcatcgct 8910786  T
Q  201 taatgaggaaaaactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatc 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| | || |||| |    
T  8910787 taatgaggaaaaacattgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacgaagagatcggcaccacc 8910886  T
Q  301 aaaataacttctctacaagcgcttttaactcac 333  Q
    |||||| ||||||||||||| ||||||||||||    
T  8910887 aaaatatcttctctacaagcacttttaactcac 8910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 8935531 - 8935863
Alignment:
Q  6 tgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagag 105  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||  ||||||||  | |||||||||| ||||| |||||||||||     
T  8935531 tgtcattgacggaaagtctgtgtggcatttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaa 8935630  T
Q  106 cgttggtttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatg 205  Q
    |||||||||||  ||||| ||||||  || ||||||||||||||||||  |||||||||||| ||||||| ||||| |||||||||||  ||||   |||    
T  8935631 cgttggtttccggatggtgttcaacggccaatacgatttcctttcactttggagcaacaaaagaatcactctgatgggttgagttttttgtcgttagatg 8935730  T
Q  206 aggaaaaactttgtttatcaaataggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaat 305  Q
    | |||||||||||||| ||||||||  |||||||||||||||| ||||||||| |||| |||||||  ||||||||||||||| ||||||||||||||||    
T  8935731 atgaaaaactttgtttctcaaatagaatatttcatttcacaaaagagaaaatcgtacagctgaaattaaaaatcaatgaagagattggtaccatcaaaat 8935830  T
Q  306 aacttctctacaagcgcttttaactcacctttg 338  Q
    | ||||||||||||||| |||||||||||||||    
T  8935831 atcttctctacaagcgcctttaactcacctttg 8935863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 8934590 - 8934669
Alignment:
Q  6 tgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatat 85  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||  | |||||||||    
T  8934590 tgtcattgacggaaagtctgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatat 8934669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 8930135 - 8930201
Alignment:
Q  6 tgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgt 72  Q
    |||| |||| |||||||| ||||| |||||||||||||||||||||||||| |||||  ||||||||    
T  8930135 tgtcattgatggaaagtctgtgtgacatttcatcaattcatgggctgaaatctcacgtagttgttgt 8930201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 8918826 - 8918920
Alignment:
Q  244 acaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttg 338  Q
    ||||||||||||||| ||||||||||||| ||| ||||   |||| |||||||| ||||||||  ||  ||| | ||||||||| ||||||||||    
T  8918826 acaaaggagaaaatcttacaactgaaatcaaaagtcaacacagagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttg 8918920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 215
Target Start/End: Complemental strand, 8103139 - 8102956
Alignment:
Q  32 atttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaact 131  Q
    ||||||| ||||| ||||||||||| ||||| ||| ||||| |  |||||| |||||||| | ||||||| || |||||||||||| |||||||||||      
T  8103139 atttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaatg 8103040  T
Q  132 tcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaaaact 215  Q
    ||||||||||||||| ||||||| | ||| ||||||||| || | ||||| ||||||||||||||| |||||| | ||||||||    
T  8103039 tcccatacgatttcccttcactaagaagctacaaaataaccaatctgatgggttgagtttttcatcatctaataacgaaaaact 8102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 40146823 - 40146992
Alignment:
Q  10 gttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgtt 109  Q
    ||||||||| |||||   |||| |||||| |||||||||||  |||| || || ||||||||     ||||| ||||||||| |  ||| ||||| ||||    
T  40146823 gttgacggagagtccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgttgca---atcaagtatccaaactcataacgctagaacgtt 40146919  T
Q  110 ggtttccaaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatga 182  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||  |||| |||||| ||| ||| ||||||    
T  40146920 ggtttccaagtggtattcaacatcccatacgatttccttttactatagagccacaaaagaatgactctgatga 40146992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 258
Target Start/End: Complemental strand, 8102928 - 8102898
Alignment:
Q  228 taggttatttcatttcacaaaggagaaaatc 258  Q
    |||||||||||||||||||||||||||||||    
T  8102928 taggttatttcatttcacaaaggagaaaatc 8102898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 6501186 - 6501031
Alignment:
Q  16 ggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttc 115  Q
    ||||||||| |||||||||| |||| ||| ||||||||||| ||||| |||||||   || ||||||||||||||| |||| ||||||| |||| |||||    
T  6501186 ggaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgtt---gtaatcaaatatccaaactcccatcactagaacgtt-gtttc 6501091  T
Q  116 caaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcact 175  Q
    |||||| |||||| | | ||||||||||||||| ||| | |||||  |||||||||||||    
T  6501090 caaatgatattcagcgttccatacgatttccttccacaatggagcctcaaaataatcact 6501031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 11969575 - 11969547
Alignment:
Q  28 tggcatttcatcaattcatgggctgaaat 56  Q
    |||||||||||||||||||||||||||||    
T  11969575 tggcatttcatcaattcatgggctgaaat 11969547  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 15190642 - 15190757
Alignment:
Q  31 catttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaac 130  Q
    |||||||||||||||  ||||||||| ||||| |||| |||     ||||||||||   ||| |||||||| || ||||  ||||||||||| |||||||    
T  15190642 catttcatcaattcactggctgaaatctcacgtggttcttgcc---atcaaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaac 15190738  T
Q  131 ttcccatacgatttccttt 149  Q
     ||||||||||||||||||    
T  15190739 gtcccatacgatttccttt 15190757  T

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