View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6197_low_18 (Length: 326)
Name: NF6197_low_18
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_18 |
 | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 33265481 - 33265797
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33265481 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaccatgttgaggaagcatag |
33265580 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33265581 |
tttattgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagattagtgtcatccgaaa |
33265680 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33265681 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaatacatcataataatt |
33265780 |
T |
|
| Q |
306 |
tcttcttgatgatgtcc |
322 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
33265781 |
tcttcttgatgaagtcc |
33265797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 33274625 - 33274941
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33274625 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaccatgttgaggaagcatag |
33274724 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33274725 |
tttattgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagattagtgtcatccgaaa |
33274824 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33274825 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaatacatcataataatt |
33274924 |
T |
|
| Q |
306 |
tcttcttgatgatgtcc |
322 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
33274925 |
tcttcttgatgaagtcc |
33274941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 33361097 - 33361397
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33361097 |
atcaacatcatagaaaacaggaagaacatgttttcctgatcccttaatgcattcacatatcttttctaattcttgcaaacaccatgttgaggaagcatag |
33361196 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33361197 |
tttcttgaaaagaatgcaacaaaaacctgagatccttcgattgctcgaatgagctcgggtccgatggattcaccttttggaagattagtgtcatccaaaa |
33361296 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| |||||||||| ||| |
|
|
| T |
33361297 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatcagtgaaattgttgcgagtgtcttcacctctaaagatgacaaacacatcataatgatt |
33361396 |
T |
|
| Q |
306 |
t |
306 |
Q |
| |
|
| |
|
|
| T |
33361397 |
t |
33361397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 33060154 - 33060454
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| || || || ||||||||||||||| |
|
|
| T |
33060154 |
atcaacatcatagaaaacaggaagaacatgttttcccgaccccttaatgcattcacatatcttttctaattcttgcaagcaccacgttgaggaagcatag |
33060253 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
|| |||| |||| |||||| ||||||||||| ||||||||| |||| ||||| ||||| ||| ||||||||||| |||||||| || ||||| || |
|
|
| T |
33060254 |
ttctttgagaagatcgcaacgtaaacctgagatatttcgattgcacgaaaaagctcaggtcctatgcattcacctttttgaagattaatgacatcccgaa |
33060353 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |
|
|
| T |
33060354 |
ataccataatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaacacatcataatgatt |
33060453 |
T |
|
| Q |
306 |
t |
306 |
Q |
| |
|
| |
|
|
| T |
33060454 |
t |
33060454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 33403210 - 33403518
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||| || |||||||||||||||||| |
|
|
| T |
33403210 |
atcaacatcatagaaaacaggaataacatgttttttggatcccttaacgcattcacatatcttctctaattcttttaagcaccatgttgaggaagcatag |
33403309 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
|| |||||||||| |||| ||||||||| |||||| |||||||||||| ||||||||| | | ||||||||| | | |||||||||||||||| || |
|
|
| T |
33403310 |
ttccttgaaaagacgacaacgaaaacctgaaatcctttgattgctcgaagaagctcgggttctaaggattcaccctgttgaagattagtgtcatctcgaa |
33403409 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| ||| ||||| |||||||| |
|
|
| T |
33403410 |
atgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttccgagtgtcttcacctctaaaggtgataaacacatcgtaataatt |
33403509 |
T |
|
| Q |
306 |
tcttcttga |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
33403510 |
tcttcttga |
33403518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 33307085 - 33307381
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||| |||| || |||||||| ||||||||| ||||||||||| | || |||||||||||||||||| |
|
|
| T |
33307085 |
atcaacatcataaaaaacaggaagaatatgttttctggatctctgaacgcatttacatatcttctctaattcttgcaggcaccatgttgaggaagcatag |
33307184 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
|| |||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||| | || |||||||| ||| ||||||||||||||||| || |
|
|
| T |
33307185 |
ttccttgagaagactgcaacaaaaacccgagatccttcgattgctcgaaggagctcaggttctatagattcacccttttgaagattagtgtcatcccgaa |
33307284 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataata |
302 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33307285 |
atgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtaaagttgttgcgagtgtcttcacctctgaaggtgacaaacacatcataata |
33307381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 6 - 304
Target Start/End: Complemental strand, 31566605 - 31566307
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | ||| ||| || ||||||||| ||||| ||||||||||| || || ||||| ||||||||||| |
|
|
| T |
31566605 |
atcaacatcatagaaaacaagaagaacatgtttttcagattcctcaatgcattcacaaatcttctctaattcttgcaagcaccatgtcgaggaagcataa |
31566506 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
||| |||| ||||| ||||||||||| |||||||||| |||||||||||| ||||| || || ||||||||||||||| ||||||| || |||||| || |
|
|
| T |
31566505 |
tttcttgagaagacggcaacaaaaacatgagatccttggattgctcgaagaagctcaggccctatggattcacctttttgaagatttgtatcatcccgaa |
31566406 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataat |
304 |
Q |
| |
|
|||||| ||| |||||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31566405 |
atacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataat |
31566307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 33412517 - 33412825
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
||||| |||||| ||||| |||||||| |||||| | | ||||| ||| |||||||| ||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
33412517 |
atcaatatcataaaaaacaggaagaacgtgtttttcaggtccctgaacacattcacagatcttttctaattcttgcaggcaccatgttgaggaagcatag |
33412616 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
|| |||||||||| || || ||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||| |||||| ||||||||| || |
|
|
| T |
33412617 |
ttccttgaaaagactgcgacgaaaacctgagatccttcgattgcacgaaggagctcaggtcctatgacttcaccttttttaagatttgtgtcatccctaa |
33412716 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
|| || ||| ||||| |||| ||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33412717 |
atgcataaatacctttggtttcaagtgcatcaaaaagataatcagtgaaattgttgcgagtgtcttcacctctgaaggtgacaaacacatcataataatt |
33412816 |
T |
|
| Q |
306 |
tcttcttga |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
33412817 |
tcttcttga |
33412825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 33642098 - 33641798
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| || |||||| || ||||||||| ||||| ||||||||||| | || |||||||||||||||||| |
|
|
| T |
33642098 |
atcaacatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatag |
33641999 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
||| |||| ||||| || || |||| ||||||| ||||||||||||||| ||||| | ||| || ||||||||||| |||||||| |||||||| || |
|
|
| T |
33641998 |
tttcttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaa |
33641899 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||||| || |||||||||||||| |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
33641898 |
ataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttcacctctgtaggtgacaaacacatcataataatt |
33641799 |
T |
|
| Q |
306 |
t |
306 |
Q |
| |
|
| |
|
|
| T |
33641798 |
t |
33641798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 33390672 - 33390980
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||| | ||||| | || ||||| || ||||| |||| |||||| ||||| ||||||||| |||||||| |
|
|
| T |
33390672 |
atcaacatcataaaaaacaggaagaacaagtttttcggatccttggacacattcccaaatcttctctatttcttgcaaacaccatgttgagaaagcatag |
33390771 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
||| |||| || ||||||||| ||||||||||||||||||||| | |||| || || ||||| ||||||||||||||| ||||||| ||| |||| || |
|
|
| T |
33390772 |
tttcttgagaaaaccgcaacataaacctgagatccttcgattgattgaagaagttcaggtcctatggattcacctttttgaagatttctgttatcccgaa |
33390871 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
33390872 |
atacaagaatgccttttgtttccagggcatcaaaaagaaaatcaatgaaattgttgcgagtgtcttcacctcggaaggtgacaaacacatcataataata |
33390971 |
T |
|
| Q |
306 |
tcttcttga |
314 |
Q |
| |
|
|||| |||| |
|
|
| T |
33390972 |
tctttttga |
33390980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 33288174 - 33288476
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| | | ||| ||||||||||||||||||||||| || || || |||||||||||||||||| |
|
|
| T |
33288174 |
atcaacatcatagaaaactggaagaatgtgttttcttgatacatgaacacattcacatatcttttctaattcctgcaagcaccatgttgaggaagcatag |
33288273 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
||| |||| || || ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||| || |
|
|
| T |
33288274 |
tttcttgagaatactgcaacgaaaacctgggatccttcgattgctcgaaggagctcaggtcctatggattcacctttttgaagattggtgtcatccctaa |
33288373 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
|| || ||| || ||||||| ||| ||||| || ||| || | ||||||||||||||||| || || ||||| ||||||| ||| || || |||| ||| |
|
|
| T |
33288374 |
atgcataaataccgtttgttttaagagcatctaatagataaccagtgaaattgttgcgagtgtcatcgcctctaaaggtgataaacacgtcgtaatgatt |
33288473 |
T |
|
| Q |
306 |
tct |
308 |
Q |
| |
|
||| |
|
|
| T |
33288474 |
tct |
33288476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 9169457 - 9169531
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttg |
80 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
9169457 |
atcaacatcatagaaaacaagaagaacatgttttcctgatacacgaacacattcacatatcttttctaattcttg |
9169531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 258
Target Start/End: Original strand, 12782164 - 12782351
Alignment:
| Q |
71 |
ctaattcttgtaaacaacatgttgaggaagcatagtttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgat |
170 |
Q |
| |
|
|||||||| | ||||| || ||||| |||||||||||| | || || || ||| ||||||||||| ||||| |||||| ||| ||| |||| | | || |
|
|
| T |
12782164 |
ctaattctcgcaaacaccaagttgaagaagcatagtttttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctat |
12782263 |
T |
|
| Q |
171 |
ggattcaccttttggaagattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattg |
258 |
Q |
| |
|
||| | ||||||| |||||||||||||||| ||| || ||| | |||| ||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
12782264 |
ggaattacctttttgaagattagtgtcatctctgaatgtaaaaattctttttctttgaagggcaccaaaaagatgatcagtgaaattg |
12782351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 17438170 - 17437870
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
17438170 |
atcaacatcatagaaaacaggaagaacatgttttcctggcacctgaacgcattcacatatcttttctaattcttccaaacaccatgttgaggaagcatag |
17438071 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
| | |||| || |||||||||||||||||||||||||| ||||||||||| ||||| | ||| ||||||||||||||| |||||||||||||||| || |
|
|
| T |
17438070 |
tatcttgagaaaaccgcaacaaaaacctgagatccttctattgctcgaagaagctcagatcctatggattcacctttttgaagattagtgtcatctcgaa |
17437971 |
T |
|
| Q |
206 |
atacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatt |
305 |
Q |
| |
|
|| ||| |||| ||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |
|
|
| T |
17437970 |
atgcaaaaatgtcttttctttcaagggcgtcaaaaagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaacacatcataatgatt |
17437871 |
T |
|
| Q |
306 |
t |
306 |
Q |
| |
|
| |
|
|
| T |
17437870 |
t |
17437870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 753 - 1052
Alignment:
| Q |
14 |
catagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatagtttattga |
113 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||| | ||||||||| ||||| ||||||||||| | || |||||||| |||||||||||| |||| |
|
|
| T |
753 |
catagaaaataggaagaacatattttccagatcccttgatgcattcacaaatcttctctaattcttgcaggcaccatgttgaagaagcatagtttcttga |
852 |
T |
|
| Q |
114 |
aaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaaatacaata |
213 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| || || | |
|
|
| T |
853 |
taagacagcaacgaaaacctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaaagcataa |
952 |
T |
|
| Q |
214 |
atgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatttcttcttg |
313 |
Q |
| |
|
|| |||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||| |
|
|
| T |
953 |
ataccttttctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttg |
1052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 9514 - 9813
Alignment:
| Q |
14 |
catagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatagtttattga |
113 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||| | ||||||||| ||||| ||||||||||| | || |||||||| |||||||||||| |||| |
|
|
| T |
9514 |
catagaaaataggaagaacatattttccagatcccttgatgcattcacaaatcttctctaattcttgcaggcaccatgttgaagaagcatagtttcttga |
9613 |
T |
|
| Q |
114 |
aaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaaatacaata |
213 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| || || | |
|
|
| T |
9614 |
taagacagcaacgaaaacctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaaagcataa |
9713 |
T |
|
| Q |
214 |
atgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataatttcttcttg |
313 |
Q |
| |
|
|| |||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||| |
|
|
| T |
9714 |
ataccttttctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttg |
9813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 305
Target Start/End: Complemental strand, 31501607 - 31501308
Alignment:
| Q |
6 |
atcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatag |
105 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| ||| | | ||||||||| ||||||||||||||||| || || || |||||||||||||| |
|
|
| T |
31501607 |
atcaacatcatagaaaacaggcagaacatgttttttagatacgtggacgcattcaaggatcttttctaattcttgcaagcaccaaattgaggaagcatag |
31501508 |
T |
|
| Q |
106 |
tttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaa |
205 |
Q |
| |
|
|| |||| | |||||||||||||| | ||| |||| ||||| ||||| ||||||| | | ||||||||||||||||||||||||||||||||| || |
|
|
| T |
31501507 |
ttccttgagaggaccgcaacaaaaatataagaatcttcaattgcacgaagaagctcggatgctatggattcaccttttggaagattagtgtcatccctaa |
31501408 |
T |
|
| Q |
206 |
atacaataatgccttttgt-ttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataataat |
304 |
Q |
| |
|
|| ||| |||||||| | | ||||| ||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||| |||||||||||| |
|
|
| T |
31501407 |
atgcaagaatgccttctctgttgaa-ggcatcaaaaagatgataagtgaaattgttgcgagtgtcttcacctctaaaagtgacaaacgcatcataataat |
31501309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 31496436 - 31496142
Alignment:
| Q |
7 |
tcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaacatgttgaggaagcatagt |
106 |
Q |
| |
|
||||||||||||||||| || |||||||||||| ||| |||| || |||||| ||||||||||||||||| || || | |||||| ||||||||| |
|
|
| T |
31496436 |
tcaacatcatagaaaacaggcagaacatgttttttagataccttgacccattcaaggatcttttctaattcttgcaagcacgaagttgagaaagcatagt |
31496337 |
T |
|
| Q |
107 |
ttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagattagtgtcatccgaaaa |
206 |
Q |
| |
|
| |||| |||||| |||||||||||||||| ||| ||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31496336 |
tccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagcttaggtcctatggattcaccttttggaagattagtgtcatctctaaa |
31496237 |
T |
|
| Q |
207 |
tacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaatacatcataat |
301 |
Q |
| |
|
| || |||||||| | | || | || |||||||||| ||| ||||||||||||||||| || |||||||| ||||||||||| || ||||||| |
|
|
| T |
31496236 |
tgcagaaatgccttctctgtggaaggtatcaaaaagatgatcagtgaaattgttgcgagtgtcctcacctctaaaggtgacaaacacgtcataat |
31496142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 305
Target Start/End: Original strand, 31030436 - 31030650
Alignment:
| Q |
91 |
gttgaggaagcatagtttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagat |
190 |
Q |
| |
|
|||||||||||||||||| | || | |||||||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
31030436 |
gttgaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagat |
31030535 |
T |
|
| Q |
191 |
tagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaa |
290 |
Q |
| |
|
||||||| || |||| ||| |||||||||| ||||||||||| |||||||| ||| |||| ||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
31030536 |
tagtgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaa |
31030635 |
T |
|
| Q |
291 |
tacatcataataatt |
305 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31030636 |
cacatcataataatt |
31030650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 305
Target Start/End: Complemental strand, 31488997 - 31488783
Alignment:
| Q |
91 |
gttgaggaagcatagtttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagat |
190 |
Q |
| |
|
|||||||||||||||||| | || | |||||||| ||||||||||| ||||| ||||| |||| |||||||||| | || |||||||||||| |||| | |
|
|
| T |
31488997 |
gttgaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtgctatcgattcacctttttgaagct |
31488898 |
T |
|
| Q |
191 |
tagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaa |
290 |
Q |
| |
|
|||||||||| ||| ||| |||||||||| ||||||||||| |||||||| ||| || || ||| |||||||||||||||||||||||||||||| |
|
|
| T |
31488897 |
tagtgtcatctctaaacgcaaaaatgccttttctttgaagggcagcaaaaagatgatcagtaaagttgaagcgagtatcttcacctctgaaggtgacaaa |
31488798 |
T |
|
| Q |
291 |
tacatcataataatt |
305 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
31488797 |
cacgtcataataatt |
31488783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 91 - 305
Target Start/End: Original strand, 31020555 - 31020769
Alignment:
| Q |
91 |
gttgaggaagcatagtttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagat |
190 |
Q |
| |
|
|||||||||| ||||||| | || | |||||||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
31020555 |
gttgaggaagaatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagat |
31020654 |
T |
|
| Q |
191 |
tagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaa |
290 |
Q |
| |
|
||| ||| || |||| ||| |||||||||| ||||||||||| |||||||| ||| |||| ||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
31020655 |
tagcgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaa |
31020754 |
T |
|
| Q |
291 |
tacatcataataatt |
305 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31020755 |
cacatcataataatt |
31020769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 91 - 300
Target Start/End: Complemental strand, 31476412 - 31476203
Alignment:
| Q |
91 |
gttgaggaagcatagtttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagat |
190 |
Q |
| |
|
|||||| |||| ||||| |||| |||||| |||| ||||||||||| ||||| ||||| ||| ||| || ||| | ||||||||||||||| |||||| |
|
|
| T |
31476412 |
gttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaattgcatgaaagagttcaggtgctatggattcacctttttgaagat |
31476313 |
T |
|
| Q |
191 |
tagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaa |
290 |
Q |
| |
|
||||||||||| |||| ||| || |||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
31476312 |
tagtgtcatccctaaatgcaaaaacacctttttcttcgagggcatcaaaaaggaaatcagtgaaattgttgcgagtatcttcacctctgaagctcacaaa |
31476213 |
T |
|
| Q |
291 |
tacatcataa |
300 |
Q |
| |
|
|| |||||| |
|
|
| T |
31476212 |
cacgtcataa |
31476203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 313
Target Start/End: Original strand, 31151061 - 31151280
Alignment:
| Q |
93 |
tgaggaagcatagtttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaagatta |
192 |
Q |
| |
|
||||||||||||||| | || || ||| ||||||||| |||||| |||| |||||||||||||| || ||| | |||||||||||||| || ||| |
|
|
| T |
31151061 |
tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta |
31151160 |
T |
|
| Q |
193 |
gtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatccgtgaaattgttgcgagtatcttcacctctgaaggtgacaaata |
292 |
Q |
| |
|
|| |||||| ||| || |||| |||| |||| |||||| |||||||| ||| ||||| ||| ||| ||||||| |||||| ||| ||||||| | |
|
|
| T |
31151161 |
gtatcatccctgaatgaaaaaatg-attttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca |
31151259 |
T |
|
| Q |
293 |
catcataataatttcttcttg |
313 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
31151260 |
cgtcataataatttctccttg |
31151280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 31159954 - 31160109
Alignment:
| Q |
88 |
catgttgaggaagcatagtttattgaaaagaccgcaacaaaaacctgagatccttcgattgctcgaaggagctcgggtccgatggattcaccttttggaa |
187 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||| |||||||| || |||| ||||| |||||||||||||| | |||||||||||||| | |
|
|
| T |
31159954 |
catgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttca |
31160053 |
T |
|
| Q |
188 |
gattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaaga |
243 |
Q |
| |
|
| |||| |||||| ||| ||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
31160054 |
ggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaaga |
31160109 |
T |
|
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