View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_19 (Length: 317)
Name: NF6197_low_19
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 12862077 - 12861793
Alignment:
| Q |
13 |
aaaataagtgcaatactcaacaacactataatctctaaa-tgagttacgaacataagagttattaatcgatcttaacagtagacattaacactataatct |
111 |
Q |
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| T |
12862077 |
aaaataagtgcaatactcaataacactataatctctaaaatgagttacgaacataagagtgattaatcgatcttaacagtagacattaacactataatct |
12861978 |
T |
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| Q |
112 |
tgaatcttgattgaaatttagaaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggac |
211 |
Q |
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| T |
12861977 |
tgaatcttgattgaaatttagaaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggac |
12861878 |
T |
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| Q |
212 |
gcataagcaacttgatgtgcataaagattctctcgattccaattactcctaccaacttcaatactctgatccactttgaaaccaa |
296 |
Q |
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| T |
12861877 |
gcataagcaacttgatgtgcataaagattctcttgattccaattactcctaccaacttcaatactctgatccactttgaaaccaa |
12861793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 34 - 292
Target Start/End: Original strand, 12843425 - 12843684
Alignment:
| Q |
34 |
aacactataatctctaaa-tgagttacgaacataagagttattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttag |
132 |
Q |
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| T |
12843425 |
aacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttac |
12843524 |
T |
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| Q |
133 |
aaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggacgcataagcaacttgatgtgca |
232 |
Q |
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| T |
12843525 |
aatgtaaaatcaatcttaacggtacctccaagcttgaacgcgaattccgatactaaaagcacaataagcatcaatggacgcataagcaatttgatcttca |
12843624 |
T |
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| Q |
233 |
taaagattctctcgattccaattactcctaccaacttcaatactctgatccactttgaaa |
292 |
Q |
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| T |
12843625 |
taaagattctctgcattccaattgctccttccaacttgtacactctgatccacttcgaaa |
12843684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 13125742 - 13125837
Alignment:
| Q |
13 |
aaaataagtgcaatactcaacaacactataatctctaaa-tgagttacgaacataagagttattaatcgatcttaacagtagacattaacactata |
107 |
Q |
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| T |
13125742 |
aaaataagtgcaatattcaacaacactataatctctaaaatgagttaggaacataagagtgattaatcgatcttaacagtacacattaacactata |
13125837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 13125589 - 13125629
Alignment:
| Q |
89 |
agtagacattaacactataatcttgaatcttgattgaaatt |
129 |
Q |
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| T |
13125589 |
agtagacattaacactatgatcttgaatcttgatagaaatt |
13125629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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