View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_2 (Length: 650)
Name: NF6197_low_2
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 53557562 - 53556983
Alignment:
| Q |
1 |
cttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557562 |
cttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtc |
53557463 |
T |
|
| Q |
101 |
tgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtttgcactaatccaagattactattataatcaaaatagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53557462 |
tgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtttgcactaaaccaagattactattataatcaaaatagtt |
53557363 |
T |
|
| Q |
201 |
tcaagtttccatatactacaaaattagagatagatttcacataatattctcgtagtatacaattttattgtttgatcagcaaacaaataattttattcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53557362 |
tcaagtttccatatactacaaaattagagatagatttcacataattttctcgtagtatacaattttcttgtttgatcagcaaacaaataattttattcaa |
53557263 |
T |
|
| Q |
301 |
acccagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgtgatctatacatacatatatataatctaagaagtactag |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
53557262 |
actcagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgtgatcaatacataca----tataatctaagaagtactag |
53557167 |
T |
|
| Q |
401 |
taattacaaaaattaagnnnnnnnntatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgta |
500 |
Q |
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| T |
53557166 |
ta---acaaaaattaagaaaaaaaatatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgta |
53557070 |
T |
|
| Q |
501 |
gcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccatcttttttgtattgttaaga |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
53557069 |
gcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacagcatggagctctacccatcttttttgtattattaaga |
53556983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 605 - 643
Target Start/End: Complemental strand, 53556965 - 53556926
Alignment:
| Q |
605 |
gaaattaggtttaatt-ctctccttgagatgatgatgatg |
643 |
Q |
| |
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| T |
53556965 |
gaaattaggtttaatttctctccttgagatgatgatgatg |
53556926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 429 - 577
Target Start/End: Complemental strand, 4685489 - 4685341
Alignment:
| Q |
429 |
ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt |
528 |
Q |
| |
|
|||||||||||||| || ||||||||||| || || ||||| |||| | ||| ||||||||||||||| ||| ||||||||| |||||||| || |||| |
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| T |
4685489 |
ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt |
4685390 |
T |
|
| Q |
529 |
tcttcacgttagccttgtcacaacatggagctctacccatcttttttgt |
577 |
Q |
| |
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|||||||||| || ||||||||||| |||||||||||||| ||| |||| |
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| T |
4685389 |
tcttcacgtttgctttgtcacaacaaggagctctacccatgtttgttgt |
4685341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4685778 - 4685705
Alignment:
| Q |
1 |
cttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
74 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| ||||||||||| | || ||||||||||||| |||||| |
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| T |
4685778 |
cttccaatactaatgtaaaggctgcaaataatgttatcttcttcttcggagaaaccaccatgtttgagattagg |
4685705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 568
Target Start/End: Original strand, 4612012 - 4612088
Alignment:
| Q |
492 |
ttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccat |
568 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||| |||| || || | ||||||||||| |||||||| ||||| |
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| T |
4612012 |
ttgagtgttgcatcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccat |
4612088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 441 - 568
Target Start/End: Complemental strand, 5113295 - 5113168
Alignment:
| Q |
441 |
tgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttag |
540 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||| ||| |||||||| |||||| |||||||||||||||| ||||| || ||||| || || || | |
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| T |
5113295 |
tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg |
5113196 |
T |
|
| Q |
541 |
ccttgtcacaacatggagctctacccat |
568 |
Q |
| |
|
| |||||||| || |||||||| ||||| |
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| T |
5113195 |
ctttgtcacagcaaggagctcttcccat |
5113168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 5113599 - 5113496
Alignment:
| Q |
19 |
aggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatc |
118 |
Q |
| |
|
||||||||||| |||| |||||||||||| | || ||||||||||| ||||| ||||| | ||||||||||| ||||| | || || || ||||||| |
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| T |
5113599 |
aggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatc |
5113500 |
T |
|
| Q |
119 |
tctt |
122 |
Q |
| |
|
|||| |
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|
| T |
5113499 |
tctt |
5113496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 568
Target Start/End: Original strand, 40820104 - 40820235
Alignment:
| Q |
437 |
tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg |
536 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |||| || || |||||| | | ||||||||| || ||||| |||||||||||||| |
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| T |
40820104 |
tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca |
40820203 |
T |
|
| Q |
537 |
ttagccttgtcacaacatggagctctacccat |
568 |
Q |
| |
|
|| || |||||||| || |||||||| ||||| |
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| T |
40820204 |
tttgctttgtcacagcaaggagctcttcccat |
40820235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 574
Target Start/End: Original strand, 41208793 - 41208920
Alignment:
| Q |
447 |
agagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgt |
546 |
Q |
| |
|
|||| |||||| |||||||||||||||| | | || ||||| || ||| | |||||||||||||||||||| || |||||||| || ||||| |||| |
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| T |
41208793 |
agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt |
41208892 |
T |
|
| Q |
547 |
cacaacatggagctctacccatcttttt |
574 |
Q |
| |
|
|||| || |||| ||| ||||| ||||| |
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|
| T |
41208893 |
cacagcaaggagatcttcccattttttt |
41208920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 47846787 - 47846845
Alignment:
| Q |
16 |
taaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||| |
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|
| T |
47846787 |
taaaggctgcaaatgatgttgtcttcttcttcggtgaaaccaccgtgcttgatgttagg |
47846845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 571
Target Start/End: Original strand, 47847050 - 47847119
Alignment:
| Q |
502 |
catcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccatctt |
571 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||| || |||||||| || || || || |||||||| |
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| T |
47847050 |
catcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcacagcaaggtgcccttcccatctt |
47847119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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