View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_20 (Length: 312)
Name: NF6197_low_20
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 46 - 296
Target Start/End: Original strand, 12862823 - 12863073
Alignment:
| Q |
46 |
ttgcttagttttagtttgactaaatcaaggttaaatacagtcttttattcaagtcggttagttactttgaagattactgatagttattttgaatgggttt |
145 |
Q |
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| T |
12862823 |
ttgcttagttttagtttgattaaatcaaggttaaatacagtcttttattcaattcggttagttactttgaagattactgatagttattttgaatgggttt |
12862922 |
T |
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| Q |
146 |
attaccttgtgacatgcataaacccctttgtacttggattgattaattcaataatatttctaaaatatttagtacattcatcaacgtagaannnnnnnnn |
245 |
Q |
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| T |
12862923 |
attaccttgtgacatgcataaacccctttgtacttggattgattaattcaataatatttctaaaatatttagtacattcatcaacatagaattttttatt |
12863022 |
T |
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| Q |
246 |
nnnnnnnacttggattgaatcatgaaaatggtgatatttagacaatctttg |
296 |
Q |
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| T |
12863023 |
ttcttttacttggattgaatcatgaaaatggtgatatttagacaatctttg |
12863073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 12842653 - 12842494
Alignment:
| Q |
76 |
ttaaatacagtcttttattcaagtcggttagttactttgaagattactgatagttattttgaatgggtttattaccttgtgacatgcataaacccctttg |
175 |
Q |
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| T |
12842653 |
ttaaatacagtcttttattcaaatctgttggttactttgaagattactgattgttattttgaatgggtttattaccttgtgacatacataaacccctttg |
12842554 |
T |
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| Q |
176 |
tacttggattgattaattcaataatatttctaaaatatttagtacattcatcaacgtagaa |
236 |
Q |
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| T |
12842553 |
tacgtagattgattaa-tcaataatatttctaaaatattcaatacattcatcaacgtagaa |
12842494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 12841358 - 12841162
Alignment:
| Q |
49 |
cttagttttagtttgactaaatcaaggttaaata------cagtcttttattcaagtcggttagttactttgaagattactgatagtta----ttttgaa |
138 |
Q |
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| T |
12841358 |
cttagttttagtttgactaagtcaaacttaattagatgagcagtcatttattcaagtcggttaattaggtagaagattattgatagttagttattttgaa |
12841259 |
T |
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| Q |
139 |
tgggtttattaccttgtgacatgcataaacccctttgtacttggattgattaattcaataatatttctaaaatatttagtacattcatcaacgtagaa |
236 |
Q |
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| T |
12841258 |
tgggtttatttccttgtgatataattaaacccctttgtacttggattgatt-attcaataatatttctaaaatattcagtacattcatcaacgtagaa |
12841162 |
T |
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