View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_22 (Length: 304)
Name: NF6197_low_22
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 27174040 - 27174315
Alignment:
| Q |
11 |
cataggcaagaggtccaatgcagctatagaacctataatatcttgttgaccgagctgacgagtacatttagattttctgttacgcgtttatttgaagaca |
110 |
Q |
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| T |
27174040 |
cataggcatgaggtccagtgcagctatagaacctataatctcttgttgaccgagctgatgagtacatttagattttctgttacgcttttatttgaagaca |
27174139 |
T |
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| Q |
111 |
ataatattgaggtccataggttggttgctgtaacaaaacttgtaggttcaagaatttggttgggacatgtatcagactttttctggtgcattatttacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27174140 |
ataatattgaggtccataggttggttgctgtaacaaaacttgtaggttcaagaatttggttgggacatgtatcagactttttctggtgcattatatacca |
27174239 |
T |
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| Q |
211 |
gggtaactctgtttctatgttttaatgcactattaagaaaaatgtatcttgtacttatgtcagatatcaataaaatta |
288 |
Q |
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| T |
27174240 |
gggtaactctgtttc--tgttttaatgcactattaagaaaaatgtatcttgtacttatgtcagatatcaataaaatta |
27174315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 27230845 - 27231120
Alignment:
| Q |
11 |
cataggcaagaggtccaatgcagctatagaacctataatatcttgttgaccgagctgacgagtacatttagattttctgttacgcgtttatttgaagaca |
110 |
Q |
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|||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
27230845 |
cataggcatgaggtccagtgcagctatagaacctataatctcttgttgaccgagctgatgagtacatttagattttctgttacgcttttatttgaagaca |
27230944 |
T |
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| Q |
111 |
ataatattgaggtccataggttggttgctgtaacaaaacttgtaggttcaagaatttggttgggacatgtatcagactttttctggtgcattatttacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27230945 |
ataatattgaggtccataggttggttgctgtaacaaaacttgtaggttcaagaatttggttgggacatgtatcagactttttctggtgcattatatacca |
27231044 |
T |
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| Q |
211 |
gggtaactctgtttctatgttttaatgcactattaagaaaaatgtatcttgtacttatgtcagatatcaataaaatta |
288 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27231045 |
gggtaactctgtttc--tgttttaatgcactattaagaaaaatgtatcttgtacttatgtcagatatcaataaaatta |
27231120 |
T |
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