View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_23 (Length: 302)
Name: NF6197_low_23
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 27174631 - 27174899
Alignment:
| Q |
9 |
gaagaatatgaagtggagtcattgccggaaaatccaatagcggctcaaatgaagattcacaaagaaaagaagacaaggcaagccaaagttgaatcatgtc |
108 |
Q |
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| T |
27174631 |
gaagaatatgaagtggagtcattgccggaaaatccaatggcggctcaaatgaagattcataaagaaaagaagacaaggcaggccaaagttgaatcatgtc |
27174730 |
T |
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| Q |
109 |
tattcaatgcggtgtcaagcacaatatttacaagaatcatgaacttgaaatccgcaaaagacatctgagactacatcaaataagaatataagaatatgat |
208 |
Q |
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| T |
27174731 |
tattcaatgcggtgtcaagcacaatatttacaagaatcatgaacttgaaatccgcaaaagacatctgagactacatcaa--------ataagaatatgat |
27174822 |
T |
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| Q |
209 |
ggaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcaga |
285 |
Q |
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| T |
27174823 |
ggaaattaaagaaccaaaaacatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcaga |
27174899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 27231436 - 27231704
Alignment:
| Q |
9 |
gaagaatatgaagtggagtcattgccggaaaatccaatagcggctcaaatgaagattcacaaagaaaagaagacaaggcaagccaaagttgaatcatgtc |
108 |
Q |
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| T |
27231436 |
gaagaatatgaagtggagtcattgccggaaaatccaatggcggctcaaatgaagattcataaagaaaagaagacaaggcaggccaaagttgaatcatgtc |
27231535 |
T |
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| Q |
109 |
tattcaatgcggtgtcaagcacaatatttacaagaatcatgaacttgaaatccgcaaaagacatctgagactacatcaaataagaatataagaatatgat |
208 |
Q |
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| T |
27231536 |
tattcaatgcggtgtcaagcacaatatttacaagaatcatgaacttgaaatccgcaaaagacatctgagactacatcaa--------ataagaatatgat |
27231627 |
T |
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| Q |
209 |
ggaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcaga |
285 |
Q |
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| T |
27231628 |
ggaaattaaagaaccaaaaacatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcaga |
27231704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 17532647 - 17532726
Alignment:
| Q |
198 |
aagaatatgatggaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaagg |
278 |
Q |
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| T |
17532647 |
aagaatatgagggaaatgaaagaaccaaaaacatgc-aaaactcaacctgattcaagagttcgagatgctaaaaatgaagg |
17532726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 14805755 - 14805676
Alignment:
| Q |
198 |
aagaatatgatggaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaagg |
278 |
Q |
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| T |
14805755 |
aagaatacgagggaaatgaaagaaccaaaaacatgcaaa-actcaacctgattcaagagttcgagatgctaaaaatgaagg |
14805676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 15252749 - 15252670
Alignment:
| Q |
198 |
aagaatatgatggaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaagg |
278 |
Q |
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| T |
15252749 |
aagaatacgagggaaatgaaagaaccaaaaacatgcaaa-actcaacctgattcaagagttcgagatgctaaaaatgaagg |
15252670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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