View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_24 (Length: 300)
Name: NF6197_low_24
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 5734693 - 5734418
Alignment:
| Q |
16 |
caaacaacaatcttccattgaaacaacacatgcctaaactcactatcttctaataattttcattccttgttgcacctatttattattcaaagcgtgaatt |
115 |
Q |
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| T |
5734693 |
caaacaacaatcttccattgaaacaacacatgcctaaactcactatcttctaataattttcattccttgctgcacctatttattattcaaagcgtgaatt |
5734594 |
T |
|
| Q |
116 |
gctattatgtgtggtattactgttgctgttttgaattggtgttcaaattcattccttgctactgtcgtgttcatattattgttccaattcaattgtgatt |
215 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
5734593 |
gctattatgtgtggtattactactgctgctttgaattggtgttcaaattcattccttgctactgccgtgttcatattgttgttccaattcaattgtgatt |
5734494 |
T |
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| Q |
216 |
gcctttttgttttcttcatgttgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactgatgat |
291 |
Q |
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||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5734493 |
gcctttttgttttctacctattgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactgctgat |
5734418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 12643779 - 12643504
Alignment:
| Q |
16 |
caaacaacaatcttccattgaaacaacacatgcctaaactcactatcttctaataattttcattccttgttgcacctatttattattcaaagcgtgaatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
12643779 |
caaacaacaatcttccattgaaacaacacatgcctaaactcactatcttctaataattttcattccttgctgcacctatttattatttaaagcgtgaatt |
12643680 |
T |
|
| Q |
116 |
gctattatgtgtggtattactgttgctgttttgaattggtgttcaaattcattccttgctactgtcgtgttcatattattgttccaattcaattgtgatt |
215 |
Q |
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| T |
12643679 |
gctattatgtgtggtattactgctgctgttttcaattggtgttcaaattcattccttgctactgccgtgttcatattgctgttccaattcaattgtaatg |
12643580 |
T |
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| Q |
216 |
gcctttttgttttcttcatgttgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactgatgat |
291 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12643579 |
gcctttttgttttcttcctgttgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactgctgat |
12643504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 7158148 - 7158200
Alignment:
| Q |
234 |
tgttgctgcgttttaaagttgcggttccattcgattccaattgcttgcaactg |
286 |
Q |
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||||||||| ||| ||||| |||||||||||| |||| | ||||||||||||| |
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| T |
7158148 |
tgttgctgcatttcaaagtggcggttccattcaattcaatttgcttgcaactg |
7158200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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