View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_27 (Length: 269)
Name: NF6197_low_27
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 30263319 - 30263561
Alignment:
| Q |
16 |
atatatacccacctcatgtcctcttaatttcagctgcatatctaaaagccattcagtgagaaaaacagtgaaagtacttctcttcctcttgattattttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30263319 |
atatatacccacctcatgtcctcttaatttcagctgcatatctaaaagccattcagtgagaaaaacagtgaaagtacttctcttcctcttgattattttc |
30263418 |
T |
|
| Q |
116 |
tgtgctttccaaacaaaatctaaggggttagataggctggcttggcttaactttgggattggtatatgtaagaaagaaatatgattcccccaaggagatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30263419 |
tgtgctttccaaacaaaatctaaggggttagataggctgggttggcttaactttgggattggtatatgtaagaaagaaatatgattcccccaaggagatt |
30263518 |
T |
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| Q |
216 |
ttgaatcagcctttgtcatatcttggattgattggtaacttcc |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30263519 |
ttgaatcagcctttgtcatatcttggattgattggtaacttcc |
30263561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 30302564 - 30302806
Alignment:
| Q |
16 |
atatatacccacctcatgtcctcttaatttcagctgcatatctaaaagccattcagtgagaaaaacagtgaaagtacttctcttcctcttgattattttc |
115 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30302564 |
atatatacacacctcatgtcctcttaatttcagctccatatctaaaagccattcagtgagaaaaacagtgaaagtacttctcttcctcttgattattttc |
30302663 |
T |
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| Q |
116 |
tgtgctttccaaacaaaatctaaggggttagataggctggcttggcttaactttgggattggtatatgtaagaaagaaatatgattcccccaaggagatt |
215 |
Q |
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| T |
30302664 |
tgtgctttccaaacaaaatctaaggggttagataggctgggttggcacaactttgggattggtatatgtaagaaagaaatatgattcccccaaggagatt |
30302763 |
T |
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| Q |
216 |
ttgaatcagcctttgtcatatcttggattgattggtaacttcc |
258 |
Q |
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| T |
30302764 |
ttgaatcagcctttgtcatatcttggattgattggtaacttcc |
30302806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 30270230 - 30270472
Alignment:
| Q |
16 |
atatatacccacctcatgtcctcttaatttcagctgcatatctaaaagccattcagtgagaaaaacagtgaaagtacttctcttcctcttgattattttc |
115 |
Q |
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||||| || |||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||| |||||| |||||||||||||||||||||| |
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| T |
30270230 |
atatacacacacctcatgtcctcttaatttcagctccatatctaagagccattcaataagaaaaacagtaaaagtatttctcttcctcttgattattttt |
30270329 |
T |
|
| Q |
116 |
tgtgctttccaaacaaaatctaaggggttagataggctggcttggcttaactttgggattggtatatgtaagaaagaaatatgattcccccaaggagatt |
215 |
Q |
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||||||||||||| ||| || |||||||||||||| ||||| | ||||||||| ||||||| || |||||||||||||||||| |||||||||||||||| |
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| T |
30270330 |
tgtgctttccaaataaactccaaggggttagatagactggccttgcttaacttggggattgatacatgtaagaaagaaatatggttcccccaaggagatt |
30270429 |
T |
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| Q |
216 |
ttgaatcagcctttgtcatatcttggattgattggtaacttcc |
258 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
30270430 |
ttgaatctgcctttgtcatatcttgaattgattggtaacttcc |
30270472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 30281959 - 30281717
Alignment:
| Q |
16 |
atatatacccacctcatgtcctcttaatttcagctgcatatctaaaagccattcagtgagaaaaacagtgaaagtacttctcttcctcttgattattttc |
115 |
Q |
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|
||||| || |||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||| |||||| |||||||||||||||||||||| |
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| T |
30281959 |
atatacacacacctcatgtcctcttaatttcagctccatatctaagagccattcaataagaaaaacagtaaaagtatttctcttcctcttgattattttt |
30281860 |
T |
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| Q |
116 |
tgtgctttccaaacaaaatctaaggggttagataggctggcttggcttaactttgggattggtatatgtaagaaagaaatatgattcccccaaggagatt |
215 |
Q |
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||||||||||||| ||| || |||||||||||||| ||||| | ||||||||| ||||||| || |||||||||||||||||| |||||||||||||||| |
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| T |
30281859 |
tgtgctttccaaataaactccaaggggttagatagactggccttgcttaacttggggattgatacatgtaagaaagaaatatggttcccccaaggagatt |
30281760 |
T |
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| Q |
216 |
ttgaatcagcctttgtcatatcttggattgattggtaacttcc |
258 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
30281759 |
ttgaatctgcctttgtcatatcttgaattgattggtaacttcc |
30281717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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