View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_28 (Length: 265)
Name: NF6197_low_28
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 274519 - 274276
Alignment:
| Q |
6 |
agaagcaaatagtgttcactatgagtaacacaaccattggagacatgtacaaagctgcaccttgaaaatcaaatctaccttgttcatatttcttgatttt |
105 |
Q |
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| T |
274519 |
agaagcaaatagtgttcactatgagtaacacaaccattggagacatgtacaaagctgcaccttgaaaatcaaatctaccttgttcatatttcttgatttt |
274420 |
T |
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| Q |
106 |
ctctttatctgtgtcaattgctttgtttgacaagttgaatttcttcttgttcaatccaaaccatttcttaactgcctctgtcattgcaaacaaactagta |
205 |
Q |
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| T |
274419 |
ctctttatctgtgtcaattgctttgtttgacaagttgaatttcttcttgttcaatccaaaccatttcttaactgcctctgtcattgcaaacaaactggta |
274320 |
T |
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| Q |
206 |
actgatttcagaatccaaattctttgttcatcccaccacattga |
249 |
Q |
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| T |
274319 |
actgatttcagaatccaaattctttgttcatcccaccacattga |
274276 |
T |
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