View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_30 (Length: 251)
Name: NF6197_low_30
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 26961453 - 26961213
Alignment:
| Q |
1 |
catacggaaaccctttctcatgcatcaatgccgacttannnnnnncagcctttatatggggtgagaaagggtgcagatcaactacattgattttcaaaaa |
100 |
Q |
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| T |
26961453 |
catacggaaaccctttctcatgcatcaatgccgacttatttttttcagcctttatatggggtgagaaagggtgcagatcaactacattgattttcaaaaa |
26961354 |
T |
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| Q |
101 |
gttattagatatataaagatacaaatattgtttttaaaattctctaattattttgttatcatttttcaatgagagaatttattcaaagaggatatatgtg |
200 |
Q |
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| T |
26961353 |
gttattagatatataaagatacaaatattgtttttaaaattctctaattattttgttatcatttttcaatgagagaatttattcaaagaggatatatgtg |
26961254 |
T |
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| Q |
201 |
gaaccatttgattttaccattgtttaatgcagttgtctctg |
241 |
Q |
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| T |
26961253 |
gaaccatttgattttaccattgtttaatgcagttgtctctg |
26961213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 26850240 - 26850148
Alignment:
| Q |
112 |
tataaagatacaaatattgtttttaaaattctctaa---ttattttgttatcatttttcaatgagagaatttattcaaagaggatatatgtggaa |
203 |
Q |
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| T |
26850240 |
tataaaaataaaattattgtttttaaaattctttaattttttttttgttatcctttatcaat--gagaatttattagaagaggatatatatggaa |
26850148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 34667653 - 34667413
Alignment:
| Q |
1 |
catacggaaaccctttctcatgcatcaatgccgacttannnnnnncagcctttatatggggtgagaaagggtgcagatcaactacattgattttcaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34667653 |
catacggaaaccctttctcatgcatcaatgccgacttatttttttcagcctttatatggagtgagaaagggtgcagatcaactacattgattttcaaaaa |
34667554 |
T |
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| Q |
101 |
gttattagatatataaagatacaaatattgtttttaaaattctctaattattttgttatcatttttcaatgagagaatttattcaaagaggatatatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34667553 |
gttattagatatataaagatacaaatattgtttttaaaattctctaattattttgttatcatttttcaatgagagaatttattcaaagaggatatatgtg |
34667454 |
T |
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| Q |
201 |
gaaccatttgattttaccattgtttaatgcagttgtctctg |
241 |
Q |
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| T |
34667453 |
gaaccatttgattttaccattgtttaatgcagttgtctctg |
34667413 |
T |
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