View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_33 (Length: 246)
Name: NF6197_low_33
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 8718853 - 8719067
Alignment:
| Q |
19 |
ctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttttttacctgtttcataaataaacacaaatattaagcaaagttgt |
118 |
Q |
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| T |
8718853 |
ctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttttttacctgtttcataaataaacacaaatattaagcaaagttgt |
8718952 |
T |
|
| Q |
119 |
ctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaagacaaaaaggaatattaaaatcacctcaagtttgtcttct |
218 |
Q |
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| T |
8718953 |
ctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaagacaaaaaggaatattaaaatcacctcaagtttgtcttct |
8719052 |
T |
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| Q |
219 |
cttgccctgtgattc |
233 |
Q |
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|||||| |||||||| |
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| T |
8719053 |
cttgccatgtgattc |
8719067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 8672544 - 8672770
Alignment:
| Q |
20 |
taatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatctttttt-acctgtttcataaa------------taaacacaaatatt |
106 |
Q |
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| T |
8672544 |
taatgaaagcttccaaatcttgaacaactagatcaacaacatggattatcatctttttttatctgtttcatgaaaaatatcgcaattaaccccaaaaata |
8672643 |
T |
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| Q |
107 |
aagcaaagttgtctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaagacaaaaaggaatattaaaatcacctca |
206 |
Q |
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| T |
8672644 |
aagcaaagttatctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaagacaaaaaggaatattaaaatcacctca |
8672743 |
T |
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| Q |
207 |
agtttgtcttctcttgccctgtgattc |
233 |
Q |
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| T |
8672744 |
agtttgtcttctcttgccatgtgattc |
8672770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 8591081 - 8591229
Alignment:
| Q |
88 |
ataaataaacacaaatattaagcaaa---gttgtctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaagacaaa |
184 |
Q |
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||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8591081 |
ataaataaacacaaaaacaaagcaaattagttgtccacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaaggcaaa |
8591180 |
T |
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| Q |
185 |
aaggaatattaaaatcacctcaagtttgtcttctcttgccctgtgattc |
233 |
Q |
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| T |
8591181 |
aaggattattaaaatcacctcaagtttgtcttctcttgccctgtgattc |
8591229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 8590988 - 8591059
Alignment:
| Q |
21 |
aatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttttttacctgtttcataaa |
92 |
Q |
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| T |
8590988 |
aatgaaagcttccaattcttcaacaacttggtcagcagcatagattatcatattttttaactgttccataaa |
8591059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 23440061 - 23439992
Alignment:
| Q |
19 |
ctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttttttacctgtttca |
88 |
Q |
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|||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23440061 |
ctaatgaaagcttcaaaatcttgaacaacttggtcaacaacatggattatcatcttttttacctgtttca |
23439992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 23439967 - 23439926
Alignment:
| Q |
87 |
cataaataaacacaaatattaagcaaagttgtctacaattat |
128 |
Q |
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| T |
23439967 |
cataattaaacacaaaaataaagcaaagttgtctacaattat |
23439926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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