View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6197_low_38 (Length: 236)

Name: NF6197_low_38
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6197_low_38
NF6197_low_38
[»] chr4 (3 HSPs)
chr4 (1-222)||(53557625-53557846)
chr4 (75-158)||(40253993-40254076)
chr4 (74-154)||(21174544-21174624)
[»] chr3 (3 HSPs)
chr3 (96-146)||(20740350-20740400)
chr3 (97-146)||(20732614-20732663)
chr3 (107-139)||(13993387-13993419)
[»] chr7 (3 HSPs)
chr7 (87-130)||(45675812-45675855)
chr7 (96-143)||(28944890-28944937)
chr7 (107-139)||(2461543-2461575)
[»] chr6 (1 HSPs)
chr6 (107-142)||(3616988-3617023)
[»] chr1 (2 HSPs)
chr1 (75-157)||(4686089-4686171)
chr1 (100-157)||(4609852-4609909)
[»] chr5 (1 HSPs)
chr5 (102-139)||(2591593-2591630)
[»] chr8 (1 HSPs)
chr8 (99-139)||(5948227-5948267)
[»] chr2 (1 HSPs)
chr2 (99-143)||(2892275-2892319)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 53557625 - 53557846
Alignment:
Q  1 tttgtcactagaatctcaccatgttagaatcctttcttctcaactaattaaattaatttcatctatataactataggtggtccattattgctgctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  53557625 tttgtcactagaatctcaccatgttagaatcctttcttctcaactaattaaattaattgtatctatataactataggtggtccattattgctgctcagtt 53557724  T
Q  101 acctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaaattactcggaaagcgaaaacagtcaaatatcaacaacagcttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  53557725 acctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaaattactcggaaagcgaaaacagtcgaatataaacaactgcttg 53557824  T
Q  201 atgaaccaaaaggacacaaatg 222  Q
    ||||||||||||||||||||||    
T  53557825 atgaaccaaaaggacacaaatg 53557846  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 40254076 - 40253993
Alignment:
Q  75 aggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaaa 158  Q
    |||||||||||||| || || || ||||| ||| |||| || ||||| ||||| ||||||||||||||||  ||||||||||||    
T  40254076 aggtggtccattatagcagcgcaattaccaggacgaacggataatgatataaagaactattggaacacaaagttgaagaagaaa 40253993  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 21174544 - 21174624
Alignment:
Q  74 taggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaa 154  Q
    ||||||||| ||||| || ||||| ||||| || || ||||||||||| || || ||||||||||||||||  ||||||||    
T  21174544 taggtggtcaattatagcagctcaattaccaggtaggacagacaatgatatcaagaactattggaacacaaagttgaagaa 21174624  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 20740400 - 20740350
Alignment:
Q  96 cagttacctggaagaacagacaatgacataaaaaactattggaacacaaga 146  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  20740400 cagttacctggaagaacagacaatgaaataaagaactactggaacacaaga 20740350  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 20732663 - 20732614
Alignment:
Q  97 agttacctggaagaacagacaatgacataaaaaactattggaacacaaga 146  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  20732663 agttacctggaagaacagacaatgaaataaagaactactggaacacaaga 20732614  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 13993419 - 13993387
Alignment:
Q  107 aagaacagacaatgacataaaaaactattggaa 139  Q
    |||||||||||||||||| ||||||||||||||    
T  13993419 aagaacagacaatgacatcaaaaactattggaa 13993387  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 45675855 - 45675812
Alignment:
Q  87 attgctgctcagttacctggaagaacagacaatgacataaaaaa 130  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  45675855 attgcagctcagttacctggaagaacagacaatgagataaaaaa 45675812  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 28944937 - 28944890
Alignment:
Q  96 cagttacctggaagaacagacaatgacataaaaaactattggaacaca 143  Q
    |||||||| ||||||||||||||||| ||||| |||| ||||||||||    
T  28944937 cagttacccggaagaacagacaatgagataaagaacttttggaacaca 28944890  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 2461543 - 2461575
Alignment:
Q  107 aagaacagacaatgacataaaaaactattggaa 139  Q
    ||||||||| |||||||||||||||||||||||    
T  2461543 aagaacagataatgacataaaaaactattggaa 2461575  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 3616988 - 3617023
Alignment:
Q  107 aagaacagacaatgacataaaaaactattggaacac 142  Q
    ||||||||||||||||||||||||||||||||||||    
T  3616988 aagaacagacaatgacataaaaaactattggaacac 3617023  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 4686089 - 4686171
Alignment:
Q  75 aggtggtccattattgctgctcagttacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaa 157  Q
    |||||||| || ||||| ||||| || || |||||||| || ||||||||||| ||||||||||| ||||| ||||| |||||    
T  4686089 aggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaaaaagaa 4686171  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 4609909 - 4609852
Alignment:
Q  100 tacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaa 157  Q
    ||||||| ||||||||||||||  | ||||||||||||||||||| | ||||||||||    
T  4609909 tacctggcagaacagacaatgatgtgaaaaactattggaacacaaaactgaagaagaa 4609852  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 2591593 - 2591630
Alignment:
Q  102 cctggaagaacagacaatgacataaaaaactattggaa 139  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  2591593 cctggtagaacagacaatgaaataaaaaactattggaa 2591630  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 5948267 - 5948227
Alignment:
Q  99 ttacctggaagaacagacaatgacataaaaaactattggaa 139  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  5948267 ttacctggaagaacagataatgagataaaaaacttttggaa 5948227  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 2892319 - 2892275
Alignment:
Q  99 ttacctggaagaacagacaatgacataaaaaactattggaacaca 143  Q
    ||||| ||||| || |||||||| |||||||||||||||||||||    
T  2892319 ttaccaggaaggacggacaatgaaataaaaaactattggaacaca 2892275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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