View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6197_low_40 (Length: 232)

Name: NF6197_low_40
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6197_low_40
NF6197_low_40
[»] chr6 (27 HSPs)
chr6 (10-232)||(4585498-4585720)
chr6 (59-232)||(4570884-4571056)
chr6 (31-230)||(4606941-4607139)
chr6 (104-232)||(4557081-4557209)
chr6 (143-231)||(4560501-4560589)
chr6 (120-232)||(4592206-4592315)
chr6 (145-232)||(4574305-4574392)
chr6 (148-225)||(4480693-4480770)
chr6 (145-218)||(4563708-4563781)
chr6 (147-232)||(4579431-4579516)
chr6 (143-232)||(4598166-4598255)
chr6 (154-232)||(4504445-4504523)
chr6 (143-232)||(4613766-4613855)
chr6 (154-232)||(3171747-3171825)
chr6 (148-232)||(4492955-4493039)
chr6 (148-224)||(4505857-4505933)
chr6 (164-232)||(4516337-4516405)
chr6 (148-232)||(4461123-4461207)
chr6 (148-232)||(4617022-4617106)
chr6 (154-232)||(4267214-4267292)
chr6 (154-224)||(4392082-4392152)
chr6 (154-232)||(4469809-4469887)
chr6 (154-232)||(4490403-4490481)
chr6 (167-232)||(4568072-4568137)
chr6 (154-204)||(4299816-4299866)
chr6 (148-204)||(4601789-4601845)
chr6 (154-210)||(4622148-4622204)
[»] chr8 (3 HSPs)
chr8 (59-232)||(16686315-16686486)
chr8 (143-232)||(20863891-20863980)
chr8 (148-232)||(1674226-1674310)
[»] chr5 (2 HSPs)
chr5 (148-231)||(28000148-28000231)
chr5 (154-232)||(24103005-24103083)
[»] scaffold0288 (1 HSPs)
scaffold0288 (154-232)||(3767-3845)
[»] chr3 (1 HSPs)
chr3 (148-229)||(1281114-1281195)
[»] scaffold0477 (1 HSPs)
scaffold0477 (154-232)||(4734-4812)
[»] chr7 (1 HSPs)
chr7 (154-204)||(3086426-3086476)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 4585498 - 4585720
Alignment:
Q  10 catcatcatgaactcttaatttattagcatcaatatatttgttatacaatacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4585498 catcatcatgaactcttaatttattagcatcaatatatttgttatacaatacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaata 4585597  T
Q  110 taatactacattgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4585598 taatactacattgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccag 4585697  T
Q  210 gtctcgtgtcctcctccgccttc 232  Q
    |||||||||||||||||||||||    
T  4585698 gtctcgtgtcctcctccgccttc 4585720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 4570884 - 4571056
Alignment:
Q  59 tacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaatataatactacattgcataaaaaat-tcacttataggtttgattttattta 157  Q
    ||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||  |||||||  ||| ||||||||||||    
T  4570884 tacaatagcctcatcccttaaattcaatagcagaagatcaatggatcaatataatactacattgcattaaaaacgtcactta--ggtgtgattttattta 4570981  T
Q  158 agcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4570982 agcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 4571056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 4607139 - 4606941
Alignment:
Q  31 tattagcatcaatatatttgttatacaatacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaatataatactacattgcataaaaa 130  Q
    |||||| ||||||||| ||| |||||| |||| || |||||||||||||||||| ||||| || ||||||||||||| |||||| |||||||||||||||    
T  4607139 tattagtatcaatatacttgctatacactacattaacatcatcccttaaattcaataggaaaagatcaatggatcaacataataatacattgcataaaaa 4607040  T
Q  131 at-tcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgcc 229  Q
    |  |||||||  ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| || |||||| ||||| ||||||||    
T  4607039 aagtcactta--ggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctcttgtccccctccgcc 4606942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 104 - 232
Target Start/End: Original strand, 4557081 - 4557209
Alignment:
Q  104 tcaatataatactacattgcataaaaaat--tcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaaca 201  Q
    ||||| |||||||| |||||||||||||   |||||||  ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4557081 tcaatgtaatactaaattgcataaaaaaaagtcactta--ggtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaaca 4557178  T
Q  202 acctccaggtctcgtgtcctcctccgccttc 232  Q
    ||| |||||||||||||||||||||||||||    
T  4557179 accaccaggtctcgtgtcctcctccgccttc 4557209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 4560501 - 4560589
Alignment:
Q  143 gtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgcctt 231  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  4560501 gtttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctt 4560589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 4592206 - 4592315
Alignment:
Q  120 ttgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtc 219  Q
    |||||||||||||| ||||| |  ||||||||||||||||||| |||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||     
T  4592206 ttgcataaaaaatt-acttaaa--tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgtt 4592302  T
Q  220 ctcctccgccttc 232  Q
    |||||| ||||||    
T  4592303 ctcctctgccttc 4592315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 4574305 - 4574392
Alignment:
Q  145 ttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||| |||||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttc 4574392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 4480693 - 4480770
Alignment:
Q  148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctc 225  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctc 4480770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 4563708 - 4563781
Alignment:
Q  145 ttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgt 218  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||    
T  4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgt 4563781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 4579431 - 4579516
Alignment:
Q  147 gattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    |||||| ||| || || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  4579431 gattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttc 4579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 4598166 - 4598255
Alignment:
Q  143 gtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    |||||||| | |||||| || ||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  4598166 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttc 4598255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 4504523 - 4504445
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||| || |||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||| ||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttc 4504445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 4613855 - 4613766
Alignment:
Q  143 gtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    |||||||||| ||| ||||  ||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  4613855 gtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttc 4613766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 3171747 - 3171825
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||  ||| || |||||||| ||||||    
T  3171747 tttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttc 3171825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 4492955 - 4493039
Alignment:
Q  148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||| ||||||||| || ||||| |||||||| ||||||||||||||||||||||| ||||||   ||||||||||| ||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttc 4493039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 4505857 - 4505933
Alignment:
Q  148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcct 224  Q
    ||||| ||||||||| ||||||||||| ||||| |||||||||||| |||||||||| |||||||| || |||||||    
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcct 4505933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 4516337 - 4516405
Alignment:
Q  164 acctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||||||||||||||||||||||  ||||||||||| || ||||| ||||||||||| ||||||    
T  4516337 acctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttc 4516405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 4461123 - 4461207
Alignment:
Q  148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||| ||||||||| || |||||||| ||||| ||||||||| ||||||||  |||||||||||| || ||||||||| |||||    
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttc 4461207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 4617022 - 4617106
Alignment:
Q  148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||| ||||||||| || |||||||| ||||| | ||||||||||||||||||||| || ||||| |||| |||||| ||||||    
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttc 4617106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 4267292 - 4267214
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||| |||| |||||||| |||| ||| || ||||||    
T  4267292 tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttc 4267214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 4392152 - 4392082
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcct 224  Q
    ||||||||| ||||||||||||| ||| |||||||||||| ||||| |||| |||||||  ||||||||||    
T  4392152 tttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcct 4392082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 4469809 - 4469887
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||| || |||||||| ||||| ||||||||| ||||||||  |||||||||||| || ||||||||| |||||    
T  4469809 tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttc 4469887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 4490481 - 4490403
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||  || |||||||||||||| ||||||||||||||||||| ||| ||  |||||||||||||| | ||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttc 4490403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 4568072 - 4568137
Alignment:
Q  167 tccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    |||||||||||||| |||||||||||||||||| || | |||||||| ||||||| ||| ||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttc 4568137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 4299866 - 4299816
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacc 204  Q
    |||||||| |||||||||||| ||||| |||||||||||||| ||||||||    
T  4299866 tttaagcagaacctccttaataactttgtccaagttcatgtacgaacaacc 4299816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 4601789 - 4601845
Alignment:
Q  148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacc 204  Q
    ||||| ||||||||| ||||||||||| ||||| |||| |||| |||||||||||||    
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaacc 4601845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 4622148 - 4622204
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccagg 210  Q
    ||||||||  ||||||||||| ||||| ||||||||  ||||||||||||| |||||    
T  4622148 tttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagg 4622204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 59 - 232
Target Start/End: Complemental strand, 16686486 - 16686315
Alignment:
Q  59 tacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaatataatactacattgcataaaaaat-tcacttataggtttgattttattta 157  Q
    ||||||||||| ||||||| |||||| | |||||| ||||||||||||||||| |||| ||||||||||||||  |||||||  ||||||||||| ||||    
T  16686486 tacaatagcat-atcccttgaattcaattggagaagatcaatggatcaatatactactgcattgcataaaaaaagtcactta--ggtttgattttgttta 16686390  T
Q  158 agcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| || ||| |||||    
T  16686389 agcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccaccttc 16686315  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 20863980 - 20863891
Alignment:
Q  143 gtttgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||| |||| | ||||| ||||||||||| ||||||    
T  20863980 gtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttc 20863891  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 1674226 - 1674310
Alignment:
Q  148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||| || ||||| |||| |||||| ||||||    
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttc 1674310  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 28000231 - 28000148
Alignment:
Q  148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgcctt 231  Q
    ||||| ||||| ||| || |||||||||||||| ||||||||||||||||||||||| || ||||| |||| |||||| |||||    
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctt 28000148  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 24103005 - 24103083
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||| |||| |||| ||| |||| ||| || ||||||    
T  24103005 tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttc 24103083  T

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Target: scaffold0288 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 3845 - 3767
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||||| ||| || ||||| |||| |||||| ||||||    
T  3845 tttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttc 3767  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 1281114 - 1281195
Alignment:
Q  148 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgcc 229  Q
    ||||| ||||||||| |  |||||||||||||| || |||||||||||||||||||| || ||||| |||| ||||||||||    
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgcc 1281195  T

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Target: scaffold0477 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 4812 - 4734
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacctccaggtctcgtgtcctcctccgccttc 232  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||| || ||||  || |||| |||||| ||||||    
T  4812 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttc 4734  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 3086426 - 3086476
Alignment:
Q  154 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaacc 204  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaacc 3086476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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