View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6197_low_5 (Length: 544)

Name: NF6197_low_5
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6197_low_5
NF6197_low_5
[»] chr5 (5 HSPs)
chr5 (11-172)||(43194044-43194205)
chr5 (437-520)||(43194461-43194544)
chr5 (299-362)||(43194323-43194386)
chr5 (453-513)||(43194305-43194365)
chr5 (299-341)||(43194495-43194537)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 43194044 - 43194205
Alignment:
Q  11 catcatcaacaccaagaaccaaatcaaatatcaattnnnnnnnnnnnnntaattttaataacatcaaatatttaacaaacttcagtttagatataatcat 110  Q
    |||||| |||||||||||||||||||||| ||||||             |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43194044 catcattaacaccaagaaccaaatcaaatctcaattaaaaaaataaaaataattttaataacatcaaatatttaacagacttcagtttagatataatcat 43194143  T
Q  111 tggttaggtcatcaaccgattcaatctcacacttaaaacacaatgtaactgaaaatcacatg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43194144 tggttaggtcatcaaccgattcaatctcacacttaaaacacaatgtaactgaaaatcacatg 43194205  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 437 - 520
Target Start/End: Original strand, 43194461 - 43194544
Alignment:
Q  437 ttaatttaataaaatcaaatatttaacacacttcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattag 520  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43194461 ttaatttaataaaatcaaatatttaacacatatcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattag 43194544  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 43194323 - 43194386
Alignment:
Q  299 aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43194323 aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgat 43194386  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 513
Target Start/End: Original strand, 43194305 - 43194365
Alignment:
Q  453 aaatatttaacacacttcaagtcaagattgaatcgttcagataacctaaccaaaacaaact 513  Q
    |||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  43194305 aaatatttaacacatttcaagttaagattgaaccgttcaggtaacctaaccaaaacaaact 43194365  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 43194495 - 43194537
Alignment:
Q  299 aagttaagattgaaccgttcaggtaacctaaccaaaacaaact 341  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||    
T  43194495 aagtcaagattgaatcgttcagataacctaaccaaaacaaact 43194537  T

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