View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_6 (Length: 424)
Name: NF6197_low_6
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 7469327 - 7468904
Alignment:
| Q |
1 |
gcatcatttgttttttctgggagtataaacttaatagctacaggacaattttcatacctgaaataatcatttttgggttaacaatgtgtattaaaactaa |
100 |
Q |
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| T |
7469327 |
gcatcatttgttttttctgggagtataaccttaatagctacaggacaattttcatacctgaaataatcatttttgggttaacaatgtgtattaaaactaa |
7469228 |
T |
|
| Q |
101 |
aattgcaataatgtatgaaactcgagcatcagttaactaaagacccttaactataagatagtatactccttcgtt-------------tcggttaatacg |
187 |
Q |
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| T |
7469227 |
aattgcaataatgtatgaaactcgagcatcaggtaactaaagacccttaactataagatagtatactccttcgtttctgttttataaatcggttaatacg |
7469128 |
T |
|
| Q |
188 |
tcttcaaagaatcggtcaaaaaataataattaatactaaagtttaattttgatacacgattaatgtaaaaaactttacattgattaaagtcaaacacnnn |
287 |
Q |
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| T |
7469127 |
tcttcaaagaatcggtcaaaaaataataattaatactaaagtttaattttgatacacgattaatgtaaaaaactttacattgattaaagtcaagcacttt |
7469028 |
T |
|
| Q |
288 |
nnnngatttgaaggttataatagattggcggtgaatgtacc-----nnnnnnnnnngattggcggtgaaaaaacatctttacagtgaacattaacataaa |
382 |
Q |
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| T |
7469027 |
ttttgatttgaaggttataatagattggcggtgaatgtaccaaaaaaaaaaagaaagattggcggtgaaaaaacatctttacagtgaacattaacataaa |
7468928 |
T |
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| Q |
383 |
ttaaatctttaatattataggatt |
406 |
Q |
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| T |
7468927 |
ttaaatctttaatattataggatt |
7468904 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 45301505 - 45301549
Alignment:
| Q |
227 |
agtttaattttgatacacgattaatgtaaaaaactttacattgat |
271 |
Q |
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| T |
45301505 |
agtttaattttgatacacttttaatgttaaaaaatttacattgat |
45301549 |
T |
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