View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6197_low_7 (Length: 420)

Name: NF6197_low_7
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6197_low_7
NF6197_low_7
[»] chr7 (6 HSPs)
chr7 (18-216)||(4911736-4911941)
chr7 (287-378)||(4911573-4911663)
chr7 (66-152)||(4911998-4912083)
chr7 (183-222)||(7211868-7211907)
chr7 (183-222)||(17272707-17272746)
chr7 (174-221)||(29681764-29681811)
[»] chr8 (1 HSPs)
chr8 (183-225)||(33763466-33763508)
[»] chr3 (7 HSPs)
chr3 (180-224)||(36738370-36738414)
chr3 (180-222)||(32385363-32385405)
chr3 (174-222)||(11512386-11512434)
chr3 (183-222)||(29081710-29081749)
chr3 (193-224)||(36738279-36738310)
chr3 (181-222)||(31342013-31342054)
chr3 (174-222)||(22894010-22894058)
[»] chr6 (5 HSPs)
chr6 (183-222)||(16193840-16193879)
chr6 (174-222)||(11448056-11448104)
chr6 (183-222)||(2543854-2543893)
chr6 (181-218)||(2980810-2980847)
chr6 (183-212)||(11448186-11448215)
[»] chr5 (6 HSPs)
chr5 (174-224)||(9177954-9178004)
chr5 (180-218)||(41287997-41288035)
chr5 (183-224)||(5215679-5215720)
chr5 (183-222)||(896277-896316)
chr5 (187-222)||(12605666-12605701)
chr5 (181-222)||(25879416-25879457)
[»] chr4 (3 HSPs)
chr4 (188-222)||(33380616-33380650)
chr4 (183-224)||(36273066-36273107)
chr4 (188-224)||(38324941-38324977)
[»] scaffold1315 (1 HSPs)
scaffold1315 (183-224)||(1821-1862)
[»] scaffold1293 (1 HSPs)
scaffold1293 (183-224)||(209-250)
[»] chr2 (3 HSPs)
chr2 (173-222)||(7755334-7755383)
chr2 (174-222)||(15562203-15562251)
chr2 (180-212)||(15562333-15562365)
[»] chr1 (5 HSPs)
chr1 (174-222)||(28739424-28739472)
chr1 (180-212)||(44381914-44381946)
chr1 (174-222)||(50754723-50754771)
chr1 (175-222)||(719102-719149)
chr1 (180-212)||(9379947-9379979)
[»] scaffold0110 (1 HSPs)
scaffold0110 (187-224)||(26512-26549)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 4911941 - 4911736
Alignment:
Q  18 caatttacaacatcaacctagggttggggacacaataaattacaacaccaatccgtgaagcaaaataagaggaaaactccatgcaaataaacca------ 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          
T  4911941 caatttacaacatcaacctagggttggggacacaataaattacaacaccaatccgtgaagcaaaataagaggaaaactcgatgcaaataaaccaacctca 4911842  T
Q  112 -----acttcaaaactacatgaagtaatacaactattattacttgcaattaagattattcatgatgcgggtagtatttgggtgacattgtggttggtgat 206  Q
         || |||||||||||||||||||||||||   ||||||||||||||||| |||||||| | |||||||  | ||||||||||||||| | ||||||    
T  4911841 aaactacctcaaaactacatgaagtaatacaac---tattacttgcaattaaggttattcat-acgcgggtaacacttgggtgacattgtgatcggtgat 4911746  T
Q  207 attggtcaac 216  Q
    ||||||||||    
T  4911745 attggtcaac 4911736  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 4911663 - 4911573
Alignment:
Q  287 caatattaccaatcataacgtcatccaaatgctatccttcatgctccataaactaaattgaattgaatcacattaatgatttaattcaaatt 378  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  4911663 caatgttaccaatcataacgtcatccaaatgctatccttcatgc-ccataaactaaattgaattgaatcacattaacgatttagttcaaatt 4911573  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 4912083 - 4911998
Alignment:
Q  66 caatccgtgaagcaaaataagaggaaaactccatgcaaataaaccaacttcaaaactacatgaagtaatacaactattattacttgc 152  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||  || ||||||| ||||    
T  4912083 caatccgtaaaacaaaataagaggaaaactccatgcaaatgaaccaac-tcaaaactacatgaaataataatacaattattaattgc 4911998  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 7211868 - 7211907
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  7211868 ttgggtgacattgtggttggtgacattggccaaccacaat 7211907  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 17272707 - 17272746
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  17272707 ttgggtgacattgtggttggtgacattggccaaccacaat 17272746  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 29681764 - 29681811
Alignment:
Q  174 gggtagtatttgggtgacattgtggttggtgatattggtcaaccacaa 221  Q
    |||||| |||| |||||||||||||||||||| ||||| |||||||||    
T  29681764 gggtagcattttggtgacattgtggttggtgacattggccaaccacaa 29681811  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 33763466 - 33763508
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaatatt 225  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  33763466 ttgggtgacattgtggttggtgacattggtcaaccacaatatt 33763508  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 36738414 - 36738370
Alignment:
Q  180 tatttgggtgacattgtggttggtgatattggtcaaccacaatat 224  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  36738414 tatttgggtgacattgtggttggtgacattggtcaactacaatat 36738370  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 32385363 - 32385405
Alignment:
Q  180 tatttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  32385363 tatttgggtgacattgtgattggtgacattggtcaaccacaat 32385405  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 11512386 - 11512434
Alignment:
Q  174 gggtagtatttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||| | ||||||||||||||||||||||| ||||| ||||||||||    
T  11512386 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaat 11512434  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 29081749 - 29081710
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  29081749 ttgggtgatattgtggttggtgacattggtcaaccacaat 29081710  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 224
Target Start/End: Original strand, 36738279 - 36738310
Alignment:
Q  193 ttgtggttggtgatattggtcaaccacaatat 224  Q
    ||||||||||||||||||||||||||||||||    
T  36738279 ttgtggttggtgatattggtcaaccacaatat 36738310  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 31342013 - 31342054
Alignment:
Q  181 atttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||| |||||||||||||||||| ||||| ||||||||||    
T  31342013 atttggatgacattgtggttggtgacattggccaaccacaat 31342054  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 22894058 - 22894010
Alignment:
Q  174 gggtagtatttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||| | ||||||||||||||||||||||| ||||  ||||||||||    
T  22894058 gggtagcacttgggtgacattgtggttggtgacattgaccaaccacaat 22894010  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 16193879 - 16193840
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  16193879 ttgggtgacattgtggttggtgacattggtcaaccacaat 16193840  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 11448056 - 11448104
Alignment:
Q  174 gggtagtatttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||| | ||||||||||||||||||||| ||||||| ||||||||||    
T  11448056 gggtagcacttgggtgacattgtggttggtaatattggccaaccacaat 11448104  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 2543893 - 2543854
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  2543893 ttgggtgacattgtggttggtgacattggccaaccacaat 2543854  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 2980847 - 2980810
Alignment:
Q  181 atttgggtgacattgtggttggtgatattggtcaacca 218  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  2980847 atttaggtgacattgtggttggtgaaattggtcaacca 2980810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 11448215 - 11448186
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggt 212  Q
    ||||||||||||||||||||||||||||||    
T  11448215 ttgggtgacattgtggttggtgatattggt 11448186  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 9178004 - 9177954
Alignment:
Q  174 gggtagtatttgggtgacattgtggttggtgatattggtcaaccacaatat 224  Q
    |||||| | |||| |||||||||||||||||||||||| ||||||||||||    
T  9178004 gggtagcacttggatgacattgtggttggtgatattggccaaccacaatat 9177954  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 41288035 - 41287997
Alignment:
Q  180 tatttgggtgacattgtggttggtgatattggtcaacca 218  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  41288035 tatttgggtgacattgtggttggtgatattggccaacca 41287997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 5215720 - 5215679
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaatat 224  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  5215720 ttgggtgacattgtggttgatgacattggtcaaccacaatat 5215679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 896277 - 896316
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  896277 ttgggtgagattgtggttggtgatattgatcaaccacaat 896316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 12605701 - 12605666
Alignment:
Q  187 gtgacattgtggttggtgatattggtcaaccacaat 222  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12605701 gtgacattgtggttggtgacattggtcaaccacaat 12605666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 25879457 - 25879416
Alignment:
Q  181 atttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||| |||||||||||||||||||||| | ||||||||||    
T  25879457 atttggatgacattgtggttggtgatattagccaaccacaat 25879416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 33380616 - 33380650
Alignment:
Q  188 tgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||||||||||||||||||||||||||||||||    
T  33380616 tgacattgtggttggtgatattggtcaaccacaat 33380650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 36273107 - 36273066
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaatat 224  Q
    ||||||||||||||||| ||||||||||  ||||||||||||    
T  36273107 ttgggtgacattgtggtcggtgatattgaccaaccacaatat 36273066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 38324977 - 38324941
Alignment:
Q  188 tgacattgtggttggtgatattggtcaaccacaatat 224  Q
    |||||||||||||||||||||||| |||||| |||||    
T  38324977 tgacattgtggttggtgatattggccaaccataatat 38324941  T

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Target: scaffold1315 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 1821 - 1862
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaatat 224  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  1821 ttgggtgacattgtggttggtgacattgatcaaccacaatat 1862  T

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Target: scaffold1293 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 250 - 209
Alignment:
Q  183 ttgggtgacattgtggttggtgatattggtcaaccacaatat 224  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  250 ttgggtgacattgtggttggtgacattgatcaaccacaatat 209  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 7755334 - 7755383
Alignment:
Q  173 cgggtagtatttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    ||||||| | ||||||||||||||||||||||| ||||| ||||||||||    
T  7755334 cgggtagcacttgggtgacattgtggttggtgacattggccaaccacaat 7755383  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 15562203 - 15562251
Alignment:
Q  174 gggtagtatttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||| ||||||||||||||||||||| ||| ||||| ||||||||||    
T  15562203 gggtagcatttgggtgacattgtggttgatgacattggccaaccacaat 15562251  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 15562365 - 15562333
Alignment:
Q  180 tatttgggtgacattgtggttggtgatattggt 212  Q
    ||||||||||||||| |||||||||||||||||    
T  15562365 tatttgggtgacattatggttggtgatattggt 15562333  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 28739472 - 28739424
Alignment:
Q  174 gggtagtatttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||| | ||||||||||||||||||||||| ||||| ||||||||||    
T  28739472 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaat 28739424  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 44381914 - 44381946
Alignment:
Q  180 tatttgggtgacattgtggttggtgatattggt 212  Q
    |||||||||||||||||||||||||||||||||    
T  44381914 tatttgggtgacattgtggttggtgatattggt 44381946  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 50754723 - 50754771
Alignment:
Q  174 gggtagtatttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    |||||||| || |||||||||||||||||||| ||||| ||||||||||    
T  50754723 gggtagtactttggtgacattgtggttggtgacattggccaaccacaat 50754771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 719149 - 719102
Alignment:
Q  175 ggtagtatttgggtgacattgtggttggtgatattggtcaaccacaat 222  Q
    ||||| |||||| ||||| |||||||||||||||||||||| ||||||    
T  719149 ggtagcatttggatgacaatgtggttggtgatattggtcaatcacaat 719102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 9379979 - 9379947
Alignment:
Q  180 tatttgggtgacattgtggttggtgatattggt 212  Q
    |||||||||||||||||||||||||| ||||||    
T  9379979 tatttgggtgacattgtggttggtgacattggt 9379947  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 26512 - 26549
Alignment:
Q  187 gtgacattgtggttggtgatattggtcaaccacaatat 224  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  26512 gtgacattgtggttggtgacattggtcaaacacaatat 26549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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