View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6197_low_8 (Length: 388)
Name: NF6197_low_8
Description: NF6197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6197_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 38582150 - 38582519
Alignment:
| Q |
16 |
atatacacatacacacatgcaaacctttacacatgcaaatgtgaccgcaattttggtttaattgcattatgatgttgctgcaacttgcaaagaccctata |
115 |
Q |
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| T |
38582150 |
atatacacatacacacatgcaaacctttacacatgcaaatgtgaccgcaattttggtttaattgcattatgatgttgctgcaacttgcaaagaccctata |
38582249 |
T |
|
| Q |
116 |
tattatattaaagctgcaattgcaatcggagaccgcagtttaaaactagacttgcatacatannnnnnnaagatatttaaccttatctttttatagcgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
38582250 |
tattatattaaagctgcaattgcaatcggagaccgcagtttaaaactagacttgcatacatatttttttacgatatttaaccttatctttttatagcgtt |
38582349 |
T |
|
| Q |
216 |
aaaagatagagttaaatatgtttcatttaattttgttatgtgttatnnnnnnnttaaacttctgcaagagagaattctataatgtattaaacatgattgc |
315 |
Q |
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| T |
38582350 |
aaaagatagagttaaatatgtttcatttaattttgttatgtgttataaaaaaattaaacttctgcaagagagaattctataatgtattaaacatgattgc |
38582449 |
T |
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| Q |
316 |
ag----nnnnnnnnttcaaaattttgaatgataaagttgacttaacaacaatgatcaaaggtgatgatgt |
381 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38582450 |
agaaaaaaataaaattcaaaattttgaatgaaaaagttgacttaacaacaatgatcaaaggtgatgatgt |
38582519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 24 - 379
Target Start/End: Complemental strand, 38617332 - 38616978
Alignment:
| Q |
24 |
atacacacatgcaaacctttacacatgcaaatgtgaccgcaattttggtttaattgcattatgatgttgctgcaacttgcaaagaccctatatattatat |
123 |
Q |
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| T |
38617332 |
atacacacatgcaaacctttacacatgcaaatgtgaccgcaattttggtttaattgcattatgatgttgctgcaacttgcaaagaccctata---tatat |
38617236 |
T |
|
| Q |
124 |
taaagctgcaattgcaatcggagaccgcagtttaaaactagacttgcatacatannnnnnnaagatatttaacc----ttatctttttatagcgttaaaa |
219 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||| ||| ||||||| | |||||||||| |||||||||||||||||||||| |
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| T |
38617235 |
taaagctgcaattgcaatcggaaatcgcagtttaaaactagatttgaatacatatttggttaccatatttaaccttaattatctttttatagcgttaaaa |
38617136 |
T |
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| Q |
220 |
gatagagttaaatatgtttcatttaattttgttatgtgttatnnnnnnnttaaacttctgcaagagagaattctataatgtattaaacatgattgcagnn |
319 |
Q |
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|| || |||||||||||||||||||| ||| || | |||||| |||||||| ||||||||| |||||||||||||||||| |||||||| || |
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| T |
38617135 |
gacagggttaaatatgtttcatttaa-tttattctttgttataaaaaatttaaacttttgcaagagaaaattctataatgtattaatcatgattgtag-a |
38617038 |
T |
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| Q |
320 |
nnnnnnttcaaaattttgaatgataaagttgacttaacaacaatgatcaaaggtgatgat |
379 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
38617037 |
ataaaattcaaaattttaaatgataacattgacttaacaacaatgatcaaaggtgatgat |
38616978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 32144433 - 32144469
Alignment:
| Q |
270 |
taaacttctgcaagagagaattctataatgtattaaa |
306 |
Q |
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||||||| |||||||||||||| |||||||||||||| |
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| T |
32144433 |
taaacttttgcaagagagaattatataatgtattaaa |
32144469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 2433803 - 2433848
Alignment:
| Q |
269 |
ttaaacttctgcaagagagaattctataatgtattaaacatgattg |
314 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
2433803 |
ttaaacttttgcaagagagaaatctataatgtattaaacatgattg |
2433848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 2430172 - 2430211
Alignment:
| Q |
278 |
tgcaagagagaattctataatgtattaaacatgattgcag |
317 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
2430172 |
tgcaagagagaattctataatgtattaatcatgactgcag |
2430211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 9271788 - 9271830
Alignment:
| Q |
269 |
ttaaacttctgcaagagagaattctataatgtattaaacatga |
311 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
9271788 |
ttaaacttttgcaaaagagaattctataacgtattaaacatga |
9271830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 29752459 - 29752503
Alignment:
| Q |
272 |
aacttctgcaagagagaattctataatgtattaaacatgattgca |
316 |
Q |
| |
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||||| |||||| |||| ||||||||||||||||||||||||||| |
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| T |
29752459 |
aacttttgcaagggagatttctataatgtattaaacatgattgca |
29752503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 41129049 - 41129002
Alignment:
| Q |
269 |
ttaaacttctgcaagagagaattctataatgtattaaacatgattgca |
316 |
Q |
| |
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||||| || ||||||||||| |||||||||||||||||||||| |||| |
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| T |
41129049 |
ttaaatttttgcaagagagatttctataatgtattaaacatgactgca |
41129002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 4178299 - 4178253
Alignment:
| Q |
270 |
taaacttctgcaagagagaattctataatgtattaaacatgattgca |
316 |
Q |
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||||||| |||||| ||||||||||||||||| ||||||| |||||| |
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| T |
4178299 |
taaacttttgcaagggagaattctataatgtactaaacattattgca |
4178253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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