View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6198_high_1 (Length: 559)

Name: NF6198_high_1
Description: NF6198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6198_high_1
NF6198_high_1
[»] scaffold0815 (2 HSPs)
scaffold0815 (88-557)||(483-945)
scaffold0815 (3-67)||(544-609)
[»] chr6 (19 HSPs)
chr6 (17-200)||(27851129-27851313)
chr6 (15-196)||(25956602-25956783)
chr6 (88-200)||(20734188-20734300)
chr6 (7-112)||(19399822-19399928)
chr6 (103-200)||(2201133-2201230)
chr6 (103-200)||(22420981-22421078)
chr6 (3-83)||(20734158-20734239)
chr6 (3-83)||(22421027-22421108)
chr6 (138-200)||(34297010-34297072)
chr6 (3-83)||(2201179-2201260)
chr6 (3-83)||(34296980-34297061)
chr6 (2-83)||(27851260-27851343)
chr6 (2-82)||(25956569-25956650)
chr6 (7-73)||(18927888-18927954)
chr6 (15-82)||(31630622-31630689)
chr6 (153-200)||(19399822-19399869)
chr6 (153-199)||(18927888-18927934)
chr6 (69-115)||(27325487-27325533)
chr6 (88-200)||(25956744-25956856)
[»] chr4 (20 HSPs)
chr4 (7-199)||(46642785-46642977)
chr4 (15-196)||(13844498-13844679)
chr4 (88-200)||(33186101-33186213)
chr4 (109-200)||(15880717-15880808)
chr4 (69-175)||(15099351-15099457)
chr4 (3-83)||(15880757-15880838)
chr4 (3-83)||(33186162-33186243)
chr4 (2-82)||(13844631-13844712)
chr4 (88-199)||(35812231-35812342)
chr4 (15-85)||(52873249-52873319)
chr4 (15-112)||(15868765-15868861)
chr4 (111-175)||(15190360-15190424)
chr4 (7-73)||(9923361-9923427)
chr4 (7-73)||(11479432-11479498)
chr4 (2-52)||(46642926-46642977)
chr4 (7-73)||(35812211-35812277)
chr4 (153-199)||(9923361-9923407)
chr4 (153-199)||(11479452-11479498)
chr4 (63-112)||(13812865-13812914)
chr4 (15-82)||(362205-362272)
[»] chr1 (17 HSPs)
chr1 (15-196)||(28194430-28194611)
chr1 (15-196)||(43697332-43697513)
chr1 (69-175)||(49261342-49261448)
chr1 (69-173)||(20636851-20636955)
chr1 (69-175)||(35981700-35981806)
chr1 (6-83)||(51274299-51274377)
chr1 (88-200)||(51274329-51274441)
chr1 (3-83)||(8885457-8885538)
chr1 (3-83)||(12328566-12328647)
chr1 (126-200)||(12328596-12328670)
chr1 (4-73)||(51326904-51326974)
chr1 (149-200)||(8885457-8885508)
chr1 (15-85)||(43543069-43543139)
chr1 (150-200)||(51326904-51326954)
chr1 (2-82)||(28194397-28194478)
chr1 (2-82)||(43697465-43697546)
chr1 (2-36)||(49261421-49261455)
[»] scaffold0116 (5 HSPs)
scaffold0116 (15-196)||(43765-43946)
scaffold0116 (43-196)||(47685-47837)
scaffold0116 (2-82)||(43732-43813)
scaffold0116 (2-82)||(47652-47733)
scaffold0116 (88-200)||(43907-44019)
[»] scaffold0009 (1 HSPs)
scaffold0009 (15-160)||(85207-85352)
[»] chr3 (22 HSPs)
chr3 (15-160)||(18439864-18440009)
chr3 (15-199)||(12269529-12269713)
chr3 (88-200)||(31415403-31415515)
chr3 (88-200)||(31224695-31224807)
chr3 (7-112)||(49969934-49970040)
chr3 (15-127)||(20630147-20630259)
chr3 (88-200)||(15447741-15447850)
chr3 (69-175)||(1465423-1465529)
chr3 (3-81)||(31415464-31415543)
chr3 (3-83)||(11912981-11913062)
chr3 (78-174)||(49389644-49389740)
chr3 (5-83)||(6808199-6808278)
chr3 (89-200)||(11912921-11913032)
chr3 (127-200)||(6808175-6808248)
chr3 (3-83)||(15447711-15447792)
chr3 (3-79)||(31224669-31224746)
chr3 (7-73)||(49389772-49389840)
chr3 (15-82)||(1988944-1989012)
chr3 (88-200)||(49969993-49970105)
chr3 (2-52)||(12269662-12269713)
chr3 (7-52)||(40812050-40812096)
chr3 (153-199)||(40812050-40812096)
[»] chr5 (25 HSPs)
chr5 (15-196)||(5889157-5889337)
chr5 (88-200)||(12122262-12122374)
chr5 (88-200)||(21555120-21555232)
chr5 (88-200)||(21557786-21557898)
chr5 (69-163)||(21741557-21741651)
chr5 (3-83)||(12122232-12122313)
chr5 (103-200)||(24212382-24212479)
chr5 (3-83)||(24212428-24212509)
chr5 (88-200)||(31455689-31455804)
chr5 (89-200)||(17875214-17875325)
chr5 (89-200)||(36460170-36460281)
chr5 (92-197)||(30615759-30615864)
chr5 (88-200)||(31455076-31455191)
chr5 (103-200)||(35852637-35852734)
chr5 (3-83)||(36460230-36460311)
chr5 (6-83)||(35852686-35852764)
chr5 (3-79)||(21557760-21557837)
chr5 (15-100)||(29915150-29915235)
chr5 (3-79)||(21555094-21555171)
chr5 (3-79)||(31455753-31455830)
chr5 (2-82)||(5889124-5889205)
chr5 (8-80)||(30615821-30615893)
chr5 (3-79)||(31455140-31455217)
chr5 (15-112)||(21871627-21871723)
chr5 (15-112)||(21875907-21876003)
[»] chr7 (23 HSPs)
chr7 (19-160)||(17232584-17232725)
chr7 (88-200)||(38480236-38480348)
chr7 (88-200)||(30820997-30821109)
chr7 (88-200)||(36685991-36686103)
chr7 (15-160)||(8468386-8468524)
chr7 (103-200)||(9320470-9320567)
chr7 (69-175)||(9389709-9389815)
chr7 (103-200)||(11092751-11092848)
chr7 (103-200)||(11085013-11085110)
chr7 (3-83)||(11092797-11092878)
chr7 (3-81)||(38480297-38480376)
chr7 (3-79)||(30820971-30821048)
chr7 (89-200)||(15213699-15213810)
chr7 (3-83)||(9320440-9320521)
chr7 (3-83)||(11085059-11085140)
chr7 (3-83)||(15213759-15213840)
chr7 (3-79)||(36685965-36686042)
chr7 (122-189)||(15439318-15439385)
chr7 (2-82)||(15439344-15439425)
chr7 (15-85)||(14270136-14270206)
chr7 (15-82)||(45847735-45847802)
chr7 (15-79)||(37727642-37727707)
chr7 (88-200)||(8468313-8468425)
[»] scaffold0737 (2 HSPs)
scaffold0737 (88-200)||(6419-6531)
scaffold0737 (3-83)||(6389-6470)
[»] chr8 (18 HSPs)
chr8 (88-200)||(21579947-21580059)
chr8 (88-200)||(29763609-29763720)
chr8 (103-200)||(32807279-32807376)
chr8 (88-200)||(41680863-41680975)
chr8 (3-83)||(21579917-21579998)
chr8 (3-83)||(29763579-29763660)
chr8 (3-83)||(42560238-42560319)
chr8 (137-200)||(42560268-42560331)
chr8 (3-73)||(32807325-32807396)
chr8 (3-83)||(41680833-41680914)
chr8 (88-159)||(39833870-39833942)
chr8 (15-85)||(1327117-1327187)
chr8 (15-82)||(27472391-27472458)
chr8 (15-82)||(38550086-38550153)
chr8 (7-67)||(18760599-18760660)
chr8 (2-82)||(39833931-39834013)
chr8 (88-144)||(22965748-22965804)
chr8 (88-200)||(38550114-38550226)
[»] scaffold1351 (2 HSPs)
scaffold1351 (88-200)||(1565-1677)
scaffold1351 (6-83)||(1629-1707)
[»] scaffold0395 (2 HSPs)
scaffold0395 (88-200)||(10894-11006)
scaffold0395 (3-83)||(10955-11036)
[»] scaffold0071 (2 HSPs)
scaffold0071 (88-200)||(14339-14451)
scaffold0071 (6-83)||(14403-14481)
[»] chr2 (20 HSPs)
chr2 (88-200)||(24865511-24865623)
chr2 (88-200)||(22500988-22501100)
chr2 (88-200)||(22508922-22509034)
chr2 (6-83)||(24865481-24865559)
chr2 (6-83)||(22501052-22501130)
chr2 (6-83)||(22508986-22509064)
chr2 (3-83)||(2524440-2524521)
chr2 (88-200)||(7672299-7672405)
chr2 (18-83)||(7672269-7672335)
chr2 (149-200)||(2524470-2524521)
chr2 (152-200)||(22501146-22501194)
chr2 (152-200)||(22509080-22509128)
chr2 (7-73)||(6576438-6576505)
chr2 (7-54)||(24883665-24883713)
chr2 (88-199)||(6576373-6576484)
chr2 (156-199)||(24436258-24436301)
chr2 (153-200)||(24883665-24883712)
chr2 (6-54)||(22501146-22501195)
chr2 (6-54)||(22509080-22509129)
chr2 (10-73)||(24436258-24436321)
[»] scaffold1137 (1 HSPs)
scaffold1137 (69-175)||(2304-2410)
[»] scaffold0599 (4 HSPs)
scaffold0599 (3-83)||(4675-4756)
scaffold0599 (89-200)||(197-308)
scaffold0599 (89-200)||(4615-4726)
scaffold0599 (3-83)||(257-338)
[»] scaffold0100 (2 HSPs)
scaffold0100 (7-85)||(36140-36218)
scaffold0100 (153-200)||(36171-36218)
[»] scaffold0434 (1 HSPs)
scaffold0434 (15-83)||(6770-6839)
[»] scaffold0080 (2 HSPs)
scaffold0080 (7-73)||(59327-59393)
scaffold0080 (88-199)||(59347-59458)
[»] scaffold0061 (2 HSPs)
scaffold0061 (7-82)||(15439-15515)
scaffold0061 (7-82)||(24497-24573)
[»] scaffold0075 (1 HSPs)
scaffold0075 (15-112)||(8350-8446)
[»] scaffold0004 (1 HSPs)
scaffold0004 (15-84)||(362964-363033)
[»] scaffold0802 (1 HSPs)
scaffold0802 (15-73)||(5478-5536)
[»] scaffold0513 (1 HSPs)
scaffold0513 (15-85)||(10961-11031)
[»] scaffold0335 (1 HSPs)
scaffold0335 (7-73)||(869-935)
[»] scaffold0810 (1 HSPs)
scaffold0810 (15-63)||(3004-3053)
[»] scaffold0001 (1 HSPs)
scaffold0001 (7-73)||(76954-77019)


Alignment Details
Target: scaffold0815 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 88 - 557
Target Start/End: Original strand, 483 - 945
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||||||||| ||||||| || ||||| |||| |||||||| || |||||||||||||||| |||||||||| |||||||||||    
T  483 atcacaacagcaagacaacatcattttaacatatgcagcaagtcaccatcaataataatcatcatatataacaattataatttcatatcaacgtctttca 582  T
Q  188 caatatataaataaatgttttctcatttaatcaaataattcatcattataatttatcatcgatatgaaactacttaatttggaaatagaatataatcatt 287  Q
    |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  583 caatatataaata----ttttctcatttaatcaaataattcatcattataatttatcatccatatgaaactacttaatttggaaatagaatataaccatt 678  T
Q  288 tgagctcatatattaaaaaatttcttcacataaatcgtatatatacacacacactatatacactaggaacacaaagtatcaacaaggtaggataattgat 387  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  679 tgagctcatatattaaaaa-ttgcttcacataaatcgtatatatacac--acactatatacactaggaacacaaagtatcaacaaggtaagttaattgat 775  T
Q  388 cttcattaagagtcatgaataaaaactttaactaattagctgcatgattaagatgttagtctcataatagttatatgtgtatattcacggcactaagact 487  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  776 cttcattaagagccatgaataaaaactttaactaattagctgcatgattaagatgttagtctcataatagttatatgtgtatattcacggcactaagact 875  T
Q  488 cgaagtatcaaagaaaatccgcactgatagcaaaacgcatataacaccaattggcacctatgctactcca 557  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  876 ccaagtatcaaagaaaatccccactgatagcaaaacgcatataacaccaattggcacctaggctactcca 945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 544 - 609
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaat 67  Q
    |||||||||||||||| || |||||||||||  | |||||||||||||||||| ||| ||||||||    
T  544 tcatatataacaattataatttcatatcaacgtctttcacaatatataaatattttctcatttaat 609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 27851129 - 27851313
Alignment:
Q  17 tacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcatttaa 115  Q
    ||||||||||||||| || ||| ||||||||||||||||  ||||||| ||  |||||||||||||||||| | ||||||| ||||||||||||||||||    
T  27851129 tacaacttcatatcagcatctttcacaatatataaatattctcacatt-aagcatcaaagtaaatcatattcagcacaacaacaagacaacatcatttaa 27851227  T
Q  116 acatatacaacaagtaaccaccaataatattcttcatatataac-aattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27851228 acatacacaacaagtaaccatcaataataatcttcatatataacaaattacaatttcatatcaacgtctttcacaatatataaata 27851313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 25956783 - 25956602
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    ||||||||||||||||| || ||| ||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  25956783 attacaacttcatatcagcatctttcacaatatataaatattctcacatt-aatcatcaaagtaaatcatattcatcacaacagcaagacaacatcattt 25956685  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatata 196  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||| || ||| | ||||| |||  |||||||| ||||||    
T  25956684 aaacatatacagcaagtaaccatcaataataatcttcatatataacatttgcaactccatatcaacaactttcacattatata 25956602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 20734300 - 20734188
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||| ||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||||||||||| |||||||||||    
T  20734300 atcacaacagcaagacaacaccatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttca 20734201  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  20734200 caatatataaata 20734188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 19399822 - 19399928
Alignment:
Q  7 atataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaa 105  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||| |||||| |||||||||| |||||||    
T  19399822 atataaccattacaacttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaaccatattcatcacaacagtaagacaa 19399921  T
Q  106 catcatt 112  Q
    |||||||    
T  19399922 catcatt 19399928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 2201133 - 2201230
Alignment:
Q  103 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||| |||||| |||||| || ||||| |||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2201133 caacaccatttagacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaata 2201230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 22420981 - 22421078
Alignment:
Q  103 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||| |||||| |||||| |||||||| || | |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22420981 caacaccatttagacatatgcaacaagtcactatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaata 22421078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 20734239 - 20734158
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  20734239 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 20734158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 22421027 - 22421108
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  22421027 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 22421108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 34297072 - 34297010
Alignment:
Q  138 aataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34297072 aataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaata 34297010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 2201179 - 2201260
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||| ||||||| |||||||||||||||    
T  2201179 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcatatttaatcatcaaagtaaatcat 2201260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 34297061 - 34296980
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| ||||||| |||| |||||||||||||||    
T  34297061 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatctaatcatcaaagtaaatcat 34296980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 27851260 - 27851343
Alignment:
Q  2 ttcatatataacaa-ttacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||| |||||| |||||||||||  ||| |||||||||||||||| |||||||||||| ||||| |||||||||    
T  27851260 ttcatatataacaaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaggtaaatcat 27851343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 25956650 - 25956569
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||||||||||| || ||||| |||||||||||| |||||| |||||| || | |||||||||||| ||||| ||||||||    
T  25956650 ttcatatataacatttgcaactccatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatca 25956569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 18927888 - 18927954
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||| | |||||||||||| |||||    
T  18927888 atataaccattacaacttcatatcaacatctttcacaatatataaatct-ttcacatttaatcatcaa 18927954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 31630689 - 31630622
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    |||| ||||||||||||||| ||| ||||||||||||||||  ||||| ||||| ||||||||||||||    
T  31630689 attataacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 31630622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 19399822 - 19399869
Alignment:
Q  153 atataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||||| ||||||| ||||||| ||| ||||||||||||||||||||    
T  19399822 atataaccattacaacttcatatcaacatctttcacaatatataaata 19399869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 18927888 - 18927934
Alignment:
Q  153 atataacaattacaatttcatattaacgtctttcacaatatataaat 199  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  18927888 atataaccattacaacttcatatcaacatctttcacaatatataaat 18927934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 27325533 - 27325487
Alignment:
Q  69 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaa 115  Q
    |||||||||||||||||||||||||||| ||| | | ||||||||||    
T  27325533 atcaaagtaaatcatatttatcacaacaacaaaatagcatcatttaa 27325487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 25956856 - 25956744
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||| ||||||| |||||||||  ||  || |||| ||||| | || ||| |||| || ||| ||| ||| ||||||| ||||||| | | |||||||    
T  25956856 atcacatcagcaaggcaacatcatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttca 25956757  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  25956756 caatatataaata 25956744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 46642785 - 46642977
Alignment:
Q  7 atataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaa 105  Q
    ||||||| |||||||||||||||||||  ||| |||| | ||||||| |  ||||||| ||| |||||| ||||||||||| |||||||||||||| ||     
T  46642785 atataaccattacaacttcatatcaacgtctttcacagtttataaatcttctcacatt-aatcatcaaattaaatcatattcatcacaacagcaaggcag 46642883  T
Q  106 catcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||||||    
T  46642884 catcatttaaacatatacaacaagtaaccaccaataatattcttcatatgtaacaattacaacttcatattaacaactttcacaatatataaat 46642977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 13844498 - 13844679
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    ||||||||||||||||| || ||| ||||||||||||||||  ||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||    
T  13844498 attacaacttcatatcagcatctttcacaatatataaatattctcacatt-aataatcaaagtaaatcatattcatcacaacagtaagacaacatcattt 13844596  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatata 196  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| || ||| | ||||| |||  |||||||| ||||||    
T  13844597 aaacatatacaacaagtaaccatcaataataatcttcatatataacatttgcaactccatatcaacaactttcacattatata 13844679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 33186101 - 33186213
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||||| ||||||| ||||||||||||| || || ||||| |||| |||||||| || ||||||||||||||||||| ||||||| |||||||||||    
T  33186101 atcacaacaacaagacatcatcatttaaacaaatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 33186200  T
Q  188 caatatataaata 200  Q
     ||||||||||||    
T  33186201 taatatataaata 33186213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 15880717 - 15880808
Alignment:
Q  109 catttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    |||||| ||||||  | ||||| |||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15880717 catttagacatatgtagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaata 15880808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 15099351 - 15099457
Alignment:
Q  69 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 168  Q
    |||||||| ||||||||| || || |||||||||||||||| |||||||||||||| |||||||||| || ||||| |||| || |||||||||| |||     
T  15099351 atcaaagtcaatcatattcattacgacagcaagacaacatcttttaaacatatacagcaagtaaccatcattaataatctttatgtataacaatttcaac 15099450  T
Q  169 ttcatat 175  Q
    |||||||    
T  15099451 ttcatat 15099457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 15880757 - 15880838
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  15880757 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaataatcaaagtaaatcat 15880838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 33186162 - 33186243
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||||||||||||||||||||  ||| || ||||||||||||| |||||||||||| |||||||||||||||    
T  33186162 tcatatataacaattacaacttcatatcaacgtctttcataatatataaatattttcacatttaatcatcaaagtaaatcat 33186243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 13844631 - 13844712
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||||||||||| || ||||| |||||||||||||| |||| |||||| |||| |||||||||||| ||||| ||||||||    
T  13844631 ttcatatataacatttgcaactccatatcaacaactttcacattatatagatattttcacatttaatcatcaacgtaaatca 13844712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 35812342 - 35812231
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||||||||  |  |||| || ||||| | || ||| |||| || ||  ||||||| ||||||| ||||||| ||| |||||||    
T  35812342 atcacaacagcaagacaacatcattagataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttca 35812243  T
Q  188 caatatataaat 199  Q
    ||||||||||||    
T  35812242 caatatataaat 35812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 52873319 - 52873249
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatat 85  Q
    |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  52873319 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcatat 52873249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 15868861 - 15868765
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcatt 112  Q
    ||||||||||||||||| || | |||||||||||||| |||  || |||| ||| |||||||||||||||||| ||||||||| ||| |||||||||||    
T  15868861 attacaacttcatatcatcatcattcacaatatataa-tattctctcatt-aatcatcaaagtaaatcatattcatcacaacaacaaaacaacatcatt 15868765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 15190360 - 15190424
Alignment:
Q  111 tttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatat 175  Q
    |||||||||||||| |||||||||| || ||||| ||||||| |||||||||| ||| |||||||    
T  15190360 tttaaacatatacagcaagtaaccatcattaataatcttcatgtataacaatttcaacttcatat 15190424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 9923361 - 9923427
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||| | |||||||||||| |||||    
T  9923361 atataaccattacaacttcatatcaacatctttcacaatatataaatct-ttcacatttaatcatcaa 9923427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 11479498 - 11479432
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||| | |||||||||||| |||||    
T  11479498 atataaccattacaacttcatatcaacatctttcacaatatataaatct-ttcacatttaatcatcaa 11479432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 46642926 - 46642977
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac-ttcacaatatataaat 52  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||||||    
T  46642926 ttcatatgtaacaattacaacttcatattaacaactttcacaatatataaat 46642977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 35812277 - 35812211
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||| | | |||||||||| |||||    
T  35812277 atataaccattacaacttcatatcaacatctttcacaatatataaatct-tccacatttaatcatcaa 35812211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 9923361 - 9923407
Alignment:
Q  153 atataacaattacaatttcatattaacgtctttcacaatatataaat 199  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  9923361 atataaccattacaacttcatatcaacatctttcacaatatataaat 9923407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 11479498 - 11479452
Alignment:
Q  153 atataacaattacaatttcatattaacgtctttcacaatatataaat 199  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  11479498 atataaccattacaacttcatatcaacatctttcacaatatataaat 11479452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 13812914 - 13812865
Alignment:
Q  63 ttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcatt 112  Q
    ||||| ||| |||||||||||||| ||||||||| ||| |||||||||||    
T  13812914 ttaatcatctaagtaaatcatattcatcacaacaacaaaacaacatcatt 13812865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 362205 - 362272
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    |||| ||||||||||||||  ||| ||||||||||||||||  ||||| ||||| ||||||||||||||    
T  362205 attataacttcatatcaacgtctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 362272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 28194611 - 28194430
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    |||||||||||||||||||| ||| ||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  28194611 attacaacttcatatcaacatctttcacaatatataaatattctcacatt-aatcatcaaagtaaatcatattcatcacaacagcaagacaacatcattt 28194513  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatata 196  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||| || ||| | ||||| |||  |||||||| ||||||    
T  28194512 aaacatatacagcaagtaaccatcaataataatcttcatatataacatttgcaactacatatcaacaactttcacattatata 28194430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 43697332 - 43697513
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    ||||||||||||||||| || ||| |||||||||| ||||   ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| |    
T  43697332 attacaacttcatatcagcatctttcacaatatatcaataatctcacatt-aatcatcaaagtaaatcatatttatcacaacagcaagacagcatcatat 43697430  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatata 196  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||| || ||| | ||||| |||  |||||||| ||||||    
T  43697431 aaacatatacagcaagtaaccaacaataataatcttcatatataacatttgcaactccatatcaacaactttcacactatata 43697513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 49261342 - 49261448
Alignment:
Q  69 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 168  Q
    |||||||||||||||||| ||||| |||||||||||  |||||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||     
T  49261342 atcaaagtaaatcatattcatcacgacagcaagacagtatcatttaaacatatataacaagtaaccatcaataataatcttcatgtataacaattacaac 49261441  T
Q  169 ttcatat 175  Q
    |||||||    
T  49261442 ttcatat 49261448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 20636851 - 20636955
Alignment:
Q  69 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 168  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||| ||||||||||||||     
T  20636851 atcaaagaaaatcatattcatcacgacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatattcatgtataacaattacaac 20636950  T
Q  169 ttcat 173  Q
    |||||    
T  20636951 ttcat 20636955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 35981806 - 35981700
Alignment:
Q  69 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 168  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || || || ||||||| |  ||||||| |||     
T  35981806 atcaaagtcaatcatattcatcacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattagtaatcttcatgtgcaacaatttcaac 35981707  T
Q  169 ttcatat 175  Q
    |||||||    
T  35981706 ttcatat 35981700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 51274377 - 51274299
Alignment:
Q  6 tatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  51274377 tatataacaattacaacttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 51274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 51274441 - 51274329
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||||| ||| |||| | ||||||||||||| || ||||| |||| |||||||| || || |||||||||||||||| ||||||| ||| |||||||    
T  51274441 atcacaacaacaaaacaaaaacatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacatctttca 51274342  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  51274341 caatatataaata 51274329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 8885457 - 8885538
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||| |||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  8885457 tcatatattacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 8885538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 12328647 - 12328566
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||||||| ||||||||||||  ||| |||||||||||||||| |||| ||||||| |||||||||||||||    
T  12328647 tcatatataacaattacatcttcatatcaacgtctttcacaatatataaatattttcaaatttaatcatcaaagtaaatcat 12328566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 12328670 - 12328596
Alignment:
Q  126 caagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||| |||| |||||||| || ||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  12328670 caagtcaccatcaataataatcatcatatataacaattacatcttcatatcaacgtctttcacaatatataaata 12328596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 51326904 - 51326974
Alignment:
Q  4 catatataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    ||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||||| |||||    
T  51326904 catatataacaattacaacttcatatcaacgtctttcataatatataaatatgttcacatttaatcatcaa 51326974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 8885457 - 8885508
Alignment:
Q  149 tcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  8885457 tcatatattacaattacaatttcatatcaacgtctttcacaatatataaata 8885508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 43543069 - 43543139
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatat 85  Q
    |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  43543069 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcatat 43543139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 51326904 - 51326954
Alignment:
Q  150 catatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  51326904 catatataacaattacaacttcatatcaacgtctttcataatatataaata 51326954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 28194478 - 28194397
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||||||||||| || ||||| |||||||||||| |||||| |||||| || | |||||||||||| ||||| ||||||||    
T  28194478 ttcatatataacatttgcaactacatatcaacaactttcacattatatagattttttcacatttaatcatcaacgtaaatca 28194397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 43697465 - 43697546
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||||||||||| || ||||| |||||||||||| |||||| |||||| || | |||||||||||| |||||  |||||||    
T  43697465 ttcatatataacatttgcaactccatatcaacaactttcacactatatagatcttttcacatttaatcatcaacttaaatca 43697546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 49261421 - 49261455
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  49261421 ttcatgtataacaattacaacttcatatcaacaac 49261455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 43946 - 43765
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    ||||||||||||||||| || ||| ||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  43946 attacaacttcatatcagcatctttcacaatatataaatattctcacatt-aatcatcaaagtaaatcatattcatcacaacagcaagacaacatcattt 43848  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatata 196  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||| || ||| | ||||| |||  |||||||| ||||||    
T  43847 aaacatatacagcaagtaaccatcaataataatcttcatatataacatttgcaactccatatcaacaactttcacattatata 43765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 47837 - 47685
Alignment:
Q  43 atatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataa 142  Q
    ||||||||||||  ||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47837 atatataaatattctcacatt-aatcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccatcaataa 47739  T
Q  143 tattcttcatatataacaattacaatttcatattaacgtctttcacaatatata 196  Q
    || ||||||||||||||| || ||| | ||||| |||  |||||||| ||||||    
T  47738 taatcttcatatataacatttgcaactacatatcaacaactttcacattatata 47685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 43813 - 43732
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||||||||||| || ||||| |||||||||||| |||||| |||||| || | |||||||||||| ||||| ||||||||    
T  43813 ttcatatataacatttgcaactccatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatca 43732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 47733 - 47652
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||||||||||| || ||||| |||||||||||| |||||| |||||| || | |||||||||||| ||||| ||||||||    
T  47733 ttcatatataacatttgcaactacatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatca 47652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 44019 - 43907
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||| ||||||| |||||||||  ||  || |||| ||||| | || ||| |||| || ||| ||| ||| ||||||| ||||||| | | |||||||    
T  44019 atcacatcagcaaggcaacatcatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttca 43920  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  43919 caatatataaata 43907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 85207 - 85352
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    |||||||||||||||||||| ||| ||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  85207 attacaacttcatatcaacatctttcacaatatataaatattctcacatt-aatcatcaaagtaaatcatattcatcacaacagcaagacaacttcattt 85305  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataaca 160  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||||    
T  85306 aaacatatacatcaagtaaccatcaataataatcttcatatataaca 85352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 18440009 - 18439864
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    ||||||||||||||||| || ||| ||||||||||| ||||  ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  18440009 attacaacttcatatcatcatctttcacaatatatagatattctcacatt-aatcatcaaagtaaatcatattcatcacaacagcaagacaacatcattt 18439911  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataaca 160  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  18439910 aaacatatacaacaagtaaccatcaataataatcttcatatataaca 18439864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 12269529 - 12269713
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    |||||||||||||||||||  | |||| ||| ||||||| |  ||||||| ||| |||||  ||||||||||| || ||||||||||| || ||||||||    
T  12269529 attacaacttcatatcaacgtccttcaaaatttataaatcttctcacatt-aatcatcaacttaaatcatattcatgacaacagcaaggcagcatcattt 12269627  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaat 199  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| || ||||| ||||||| |||  ||||||||||||||||||    
T  12269628 aaacatatacaacaagtaaccaccgataatattcttcatatgtaaaaaatacaacttcatatcaacaactttcacaatatataaat 12269713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 31415403 - 31415515
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||| ||||||| |||||||||||    
T  31415403 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 31415502  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  31415503 caatatataaata 31415515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 31224807 - 31224695
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||| ||||||| |||||||||||    
T  31224807 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 31224708  T
Q  188 caatatataaata 200  Q
    || ||||||||||    
T  31224707 cattatataaata 31224695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 49970040 - 49969934
Alignment:
Q  7 atataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaa 105  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |||||||    
T  49970040 atataaccattacaacttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatattcatcacaacaggaagacaa 49969941  T
Q  106 catcatt 112  Q
    |||||||    
T  49969940 catcatt 49969934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 20630259 - 20630147
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    |||||||||||||||||||| ||| ||||||||||||||||  ||||||| |||  ||||||||||||||||| || |||||||||||||||||||||||    
T  20630259 attacaacttcatatcaacatctttcacaatatataaatattctcacatt-aatcgtcaaagtaaatcatattcattacaacagcaagacaacatcattt 20630161  T
Q  114 aaacatatacaaca 127  Q
    ||||||||||||||    
T  20630160 aaacatatacaaca 20630147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 15447850 - 15447741
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||    ||||||||||||||||||| ||||||| |||||||||||    
T  15447850 atcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataata---atcatatataacaattacaacttcatatcaacgtctttca 15447754  T
Q  188 caatatataaata 200  Q
    || ||||| ||||    
T  15447753 cattatatgaata 15447741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 1465529 - 1465423
Alignment:
Q  69 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 168  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||||||| | |||||||||| || ||||| ||||||| |||||||||| |||     
T  1465529 atcaaagtcaatcatattcatcacggcagcaagacaacatcatttaaacatatagagcaagtaaccatcattaataatcttcatgtataacaatttcaac 1465430  T
Q  169 ttcatat 175  Q
    |||||||    
T  1465429 ttcatat 1465423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 31415464 - 31415543
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatc 81  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||    
T  31415464 tcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatc 31415543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 11912981 - 11913062
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  11912981 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 11913062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 49389740 - 49389644
Alignment:
Q  78 aatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcata 174  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||  ||||||  ||||||| |||||||||| ||| ||||||    
T  49389740 aatcatattcatcacgacagcaagacaacatcatttaaacatatacaataagtacccattaataatgatcttcatgtataacaatttcaacttcata 49389644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 6808199 - 6808278
Alignment:
Q  5 atatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  6808199 atatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 6808278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 11912921 - 11913032
Alignment:
Q  89 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcac 188  Q
    ||||||| ||||| ||||| |||| ||  |||| || ||||| | || |||||||| |  ||||||||||||||||||||||||||| ||||||||||||    
T  11912921 tcacaaccgcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcac 11913020  T
Q  189 aatatataaata 200  Q
    ||||||||||||    
T  11913021 aatatataaata 11913032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 6808175 - 6808248
Alignment:
Q  127 aagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    |||| |||| |||||||| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6808175 aagtcaccatcaataataatcattatatataacaattacaatttcatatcaacgtctttcacaatatataaata 6808248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 15447792 - 15447711
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||||||||||||||||||||  ||| |||| ||||| ||||| |||||||||||| |||||||||||||||    
T  15447792 tcatatataacaattacaacttcatatcaacgtctttcacattatatgaatattttcacatttaatcatcaaagtaaatcat 15447711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 31224746 - 31224669
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaa 79  Q
    |||||||||||||||||||||||||||||||  ||| |||| ||||||||||| |||||||||||| |||||||||||    
T  31224746 tcatatataacaattacaacttcatatcaacgtctttcacattatataaatattttcacatttaatcatcaaagtaaa 31224669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 49389840 - 49389772
Alignment:
Q  7 atataacaattacaacttcatatcaacaacttcacaatata--taaatatgttcacatttaattatcaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||| |||||    
T  49389840 atataacaattacaacttcatatcaacaacttcacaatatatctaaatattttcacatttaatcatcaa 49389772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 1989012 - 1988944
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    |||||||||||||||||||||| |||||| |||||| || | |||||||||||| ||||| || |||||    
T  1989012 attacaacttcatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtgaatca 1988944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 49970105 - 49969993
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||| ||  | |||| ||  |||| || ||||| | || ||| |||| || ||| ||||||| ||||||| ||||||| ||| |||||||    
T  49970105 atcacaacagcaaggcagtaccattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattacaacttcatatcaacatctttca 49970006  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  49970005 caatatataaata 49969993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 12269662 - 12269713
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac-ttcacaatatataaat 52  Q
    ||||||| ||| || |||||||||||||||||||| ||||||||||||||||    
T  12269662 ttcatatgtaaaaaatacaacttcatatcaacaactttcacaatatataaat 12269713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 40812050 - 40812096
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaat 52  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||||    
T  40812050 atataaccattacaacttcatatcaacatctttcacaatatataaat 40812096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 40812050 - 40812096
Alignment:
Q  153 atataacaattacaatttcatattaacgtctttcacaatatataaat 199  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  40812050 atataaccattacaacttcatatcaacatctttcacaatatataaat 40812096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 5889337 - 5889157
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    ||||||||||||||||| || ||| ||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||| |||| |||||||||||||||    
T  5889337 attacaacttcatatcagcatctttcacaatatataaatattctcacatt-aatcatcaaagtaaatcatattcatcacgacag-aagacaacatcattt 5889240  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatata 196  Q
    ||||||||||| |||||||||| |||||||| ||||||| |||||||||| ||| | ||||| |||  |||||||| ||||||    
T  5889239 aaacatatacagcaagtaaccatcaataataatcttcatgtataacaattgcaactacatatcaacaactttcacattatata 5889157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 12122374 - 12122262
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||||||||||||| |||||||||||||||| |  ||||| |||| |||||||| || ||||||||||||||||||| ||||||| |||||||||||    
T  12122374 atcacaacagcaagacatcatcatttaaacatatgccgcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 12122275  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  12122274 caatatataaata 12122262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 21555232 - 21555120
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||| || || | |||||||||||    
T  21555232 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaactttatgtcaacgtctttca 21555133  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  21555132 caatatataaata 21555120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 21557898 - 21557786
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||| ||||||||||||||||||||||||||||| || ||||| || | |||||||| || ||||||||||||||||||| ||||||| |||||||||||    
T  21557898 atcataacagcaagacaacatcatttaaacatatgcagcaagtcactatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 21557799  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  21557798 caatatataaata 21557786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 21741651 - 21741557
Alignment:
Q  69 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaatt 163  Q
    |||||| | ||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||    
T  21741651 atcaaattcaatcatatacatcacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatgtataacaatt 21741557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 12122313 - 12122232
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  12122313 tcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 12122232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 24212382 - 24212479
Alignment:
Q  103 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    |||||||||||| |||||| || ||||| |||| ||||| || || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  24212382 caacatcatttagacatatgcagcaagtcaccatcaatattaatcatcatatataacaattacaacttcatatcaacgtctttcacaatatataaata 24212479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 24212428 - 24212509
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  24212428 tcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 24212509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 31455689 - 31455804
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattc---ttcatatataacaattacaatttcatattaacgtctt 184  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| ||    |||| |||||| ||||||| ||||||| ||||| ||    
T  31455689 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcaatatcatttataacgattacaacttcatatcaacgtttt 31455788  T
Q  185 tcacaatatataaata 200  Q
    ||||||||||||||||    
T  31455789 tcacaatatataaata 31455804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 17875214 - 17875325
Alignment:
Q  89 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcac 188  Q
    |||||||||||||| || ||||||||||||||| || ||||| |||| |||||||| || |||||||||||||||| || ||||||| |||||||||  |    
T  17875214 tcacaacagcaagataatatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattagaacttcatatcaacgtctttatc 17875313  T
Q  189 aatatataaata 200  Q
    | ||||||||||    
T  17875314 attatataaata 17875325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 36460170 - 36460281
Alignment:
Q  89 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcac 188  Q
    ||||||| ||||||||||| |||| ||  |||| || ||||| | ||  ||||||| || ||||||||||||||||||||||||||| ||||||||||||    
T  36460170 tcacaaccgcaagacaacaccattaaataatatgcagcaagtcaacattaataataatcatcatatataacaattacaatttcatatcaacgtctttcac 36460269  T
Q  189 aatatataaata 200  Q
    ||||||||||||    
T  36460270 aatatataaata 36460281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 30615759 - 30615864
Alignment:
Q  92 caacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaat 191  Q
    ||||||||||||| |||| ||||||||||| || ||||| |||| || ||||| || |||  |||||||||||||| ||||||| |||||||||||||||    
T  30615759 caacagcaagacatcatcgtttaaacatatgcagcaagtcaccatcattaataatcatcaattataacaattacaacttcatatcaacgtctttcacaat 30615858  T
Q  192 atataa 197  Q
    ||||||    
T  30615859 atataa 30615864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 31455076 - 31455191
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattc---ttcatatataacaattacaatttcatattaacgtctt 184  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| ||    |||| |||||| ||||||| || |||| ||||| ||    
T  31455076 atcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcaatatcatttataacgattacaacttaatatcaacgtttt 31455175  T
Q  185 tcacaatatataaata 200  Q
    ||||||||||||||||    
T  31455176 tcacaatatataaata 31455191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 35852637 - 35852734
Alignment:
Q  103 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||| |||||| |||||| || ||||  |||| |||||||| || || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35852637 caacaccatttagacatatgcagcaagccaccatcaataataatcatcgtatataacaattacaatttcatatcaacgtctttcacaatatataaata 35852734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 36460230 - 36460311
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  36460230 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 36460311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 35852686 - 35852764
Alignment:
Q  6 tatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  35852686 tatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 35852764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 21557837 - 21557760
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaa 79  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||| |||||| ||||    
T  21557837 tcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaactaaa 21557760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 29915235 - 29915150
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaa 100  Q
    |||||||||||||||||||| ||| ||||||||||||||||  ||||||| ||| ||||||||| |||||||| |||||||||||||    
T  29915235 attacaacttcatatcaacatctttcacaatatataaatattctcacatt-aatcatcaaagtagatcatattcatcacaacagcaa 29915150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 21555171 - 21555094
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaa 79  Q
    |||||||||||||||||||||| || |||||  ||| |||||||||||||||| |||||||||||| |||||| ||||    
T  21555171 tcatatataacaattacaactttatgtcaacgtctttcacaatatataaatattttcacatttaatcatcaaactaaa 21555094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 31455753 - 31455830
Alignment:
Q  3 tcatatataacaattacaacttcatatcaac-aacttcacaatatataaatatgttcacatttaattatcaaagtaaa 79  Q
    |||| |||||| |||||||||||||||||||    |||||||||||||||||| |||||||||||| |||||||||||    
T  31455753 tcatttataacgattacaacttcatatcaacgtttttcacaatatataaatattttcacatttaatcatcaaagtaaa 31455830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 5889205 - 5889124
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||| |||||||||| ||||| |||||||||||| |||||| |||||| || | |||||||||||| ||||| ||||||||    
T  5889205 ttcatgtataacaattgcaactacatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatca 5889124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 30615821 - 30615893
Alignment:
Q  8 tataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaat 80  Q
    ||||||||||||||||||||||||||  | |||||||||||| ||||| |||||||||||| || |||||||||    
T  30615821 tataacaattacaacttcatatcaacgtctttcacaatatat-aatattttcacatttaatcataaaagtaaat 30615893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 31455140 - 31455217
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaa 79  Q
    |||| |||||| |||||||||| ||||||||   || |||||||||||||||| |||||||||||| |||||||||||    
T  31455140 tcatttataacgattacaacttaatatcaacgtttttcacaatatataaatattttcacatttaatcatcaaagtaaa 31455217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 21871723 - 21871627
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcatt 112  Q
    ||||||||||||||||| || | |||||||||||||| |||  || |||| |||  ||||||||||||||||| ||||||||| ||||||| |||||||    
T  21871723 attacaacttcatatcatcatcattcacaatatataa-tattctctcatt-aatcgtcaaagtaaatcatattcatcacaacaacaagacagcatcatt 21871627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 21876003 - 21875907
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcatt 112  Q
    ||||||||||||||||| || | |||||||||||||| |||  || |||| |||  ||||||||||||||||| ||||||||| ||||||| |||||||    
T  21876003 attacaacttcatatcatcatcattcacaatatataa-tattctctcatt-aatcgtcaaagtaaatcatattcatcacaacaacaagacagcatcatt 21875907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 17232584 - 17232725
Alignment:
Q  19 caacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaac 117  Q
    |||||||||||||||| ||| ||||||||||||||||  ||||||| ||| |||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  17232584 caacttcatatcaacatctttcacaatatataaatattctcacatt-aatcatcaaagtaaatcatattcatcacaacagcatgacatcatcatttaaac 17232682  T
Q  118 atatacaacaagtaaccaccaataatattcttcatatataaca 160  Q
    |||||||||||||||||| || ||||| ||||||||| |||||    
T  17232683 atatacaacaagtaaccatcattaataatcttcatatgtaaca 17232725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 38480236 - 38480348
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||||||||||||||||||||||||| |||| || ||||| |||| |||||||| || ||||||||||||||||||| ||||||| |||||||||||    
T  38480236 atcacaacagcaagacaacatcatttaaatatatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 38480335  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  38480336 caatatataaata 38480348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 30821109 - 30820997
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||||| |||||||||||||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||| ||||||| ||||| |||||    
T  30821109 atcacaacaacaagacaacatcatttaaacatatgcagcaagttaccatcaataataatcatcatatataacaattacaacttcatatcaacgtatttca 30821010  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  30821009 caatatataaata 30820997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 36686103 - 36685991
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || |||||||||||||||| || ||||||| | |||||||||    
T  36686103 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattaaaacttcatatcagcgtctttca 36686004  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  36686003 caatatataaata 36685991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 8468386 - 8468524
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcattt 113  Q
    |||||||||||||||||||| ||| ||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||||||||||       |||||||    
T  8468386 attacaacttcatatcaacatctttcacaatatataaatattatcacatt-aatcatcaaagtaaatcatattcatcacaacagca-------atcattt 8468477  T
Q  114 aaacatatacaacaagtaaccaccaataatattcttcatatataaca 160  Q
    |||||||||||||||||||||| || ||||| ||||||||| |||||    
T  8468478 aaacatatacaacaagtaaccatcattaataatcttcatatgtaaca 8468524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 9320567 - 9320470
Alignment:
Q  103 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||| |||||| |||||| |||||||| |||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9320567 caacaccatttagacatatgcaacaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaata 9320470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 9389815 - 9389709
Alignment:
Q  69 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 168  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||| |||| ||||| |||     
T  9389815 atcaaagtcaatcatattcatcacgacagcaagacaacatcatttaaacatatacagcaagtaaccatcattaataatcttcatgtatatcaatttcaac 9389716  T
Q  169 ttcatat 175  Q
    |||||||    
T  9389715 ttcatat 9389709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 11092751 - 11092848
Alignment:
Q  103 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||| ||||||||| ||| |||||||| |||| |||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  11092751 caacaccatttaaacgtatgcaacaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacatctttcacaatatataaata 11092848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 11085013 - 11085110
Alignment:
Q  103 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||| ||||||| | ||| || ||||| |||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11085013 caacaccatttaatcgtatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaata 11085110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 11092797 - 11092878
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  11092797 tcatatataacaattacaatttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 11092878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 38480297 - 38480376
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatc 81  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||    
T  38480297 tcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatc 38480376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 30821048 - 30820971
Alignment:
Q  3 tcatatataacaattacaacttcatatcaaca-acttcacaatatataaatatgttcacatttaattatcaaagtaaa 79  Q
    |||||||||||||||||||||||||||||||  | |||||||||||||||||| |||||||||||| |||||||||||    
T  30821048 tcatatataacaattacaacttcatatcaacgtatttcacaatatataaatattttcacatttaatcatcaaagtaaa 30820971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 15213699 - 15213810
Alignment:
Q  89 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcac 188  Q
    ||||||| ||||| ||||| |||| ||  |||| || ||||| | || |||||||| || ||||||||||||||||||||||||||| || |||||||||    
T  15213699 tcacaaccgcaaggcaacaccattaaataatatgcagcaagtcaacatcaataataatcatcatatataacaattacaatttcatatcaatgtctttcac 15213798  T
Q  189 aatatataaata 200  Q
    ||||||||||||    
T  15213799 aatatataaata 15213810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 9320521 - 9320440
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||| ||||||||    
T  9320521 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaaataaatcat 9320440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 11085059 - 11085140
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||  |||||||||||| |||||||||||||||    
T  11085059 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatagtttcacatttaatcatcaaagtaaatcat 11085140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 15213759 - 15213840
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| ||||||||||   ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  15213759 tcatatataacaattacaatttcatatcaatgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 15213840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 36686042 - 36685965
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaa 79  Q
    |||||||||||||||| |||||||||||| |  ||| |||||||||||||||| |||||||||||| |||||||||||    
T  36686042 tcatatataacaattaaaacttcatatcagcgtctttcacaatatataaatattttcacatttaatcatcaaagtaaa 36685965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 15439318 - 15439385
Alignment:
Q  122 acaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcaca 189  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||  ||||||||    
T  15439318 acaacaagtaaccatcaataataatcttcatatataacaattacaacttcatatcaacaactttcaca 15439385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 15439344 - 15439425
Alignment:
Q  2 ttcatatataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||||||||||||||||||||||||||||||||| ||||||   |||| || | |||||||||||| ||||| ||||||||    
T  15439344 ttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 15439425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 14270206 - 14270136
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatat 85  Q
    |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  14270206 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcatat 14270136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 45847802 - 45847735
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| ||||||||||||||    
T  45847802 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 45847735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 37727707 - 37727642
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaa 79  Q
    |||||||||||||||| ||||| |||||| |||||| || | |||||||||||| ||||| |||||    
T  37727707 attacaacttcatatctacaactttcacattatatagatcttttcacatttaatcatcaacgtaaa 37727642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 8468313 - 8468425
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||| ||||||| ||||| |||| ||  || |||| ||||| | || ||| |||| || ||  ||| ||| ||||||| ||||||| ||| |||||||    
T  8468313 atcacatcagcaaggcaacaccattaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttca 8468412  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  8468413 caatatataaata 8468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 6531 - 6419
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||| |||||||||||| ||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||||||||||| |||||||||||    
T  6531 atcacaatagcaagacaacaccatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttca 6432  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  6431 caatatataaata 6419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 6470 - 6389
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  6470 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 6389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 21580059 - 21579947
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| |  ||||||||||||||||||| ||||||| |||||||||||    
T  21580059 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataattatcatatataacaattacaacttcatatcaacgtctttca 21579960  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  21579959 caatatataaata 21579947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 29763720 - 29763609
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||||||||||||| |||||||||||||||| || ||| | |||| | |||||| || ||||||||||||||||||| ||||||| |||||||||||    
T  29763720 atcacaacagcaagacatcatcatttaaacatatgcagcaa-tcaccatcgataataatcatcatatataacaattacaacttcatatcaacgtctttca 29763622  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  29763621 caatatataaata 29763609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 32807279 - 32807376
Alignment:
Q  103 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||| |||||| |||||| || ||||| |||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32807279 caacaccatttagacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaata 32807376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 41680975 - 41680863
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||||| ||||||| || ||||||||||||| || ||||| |||| |||||||| || |||||||||||||||||||||| |||| ||  |||||||    
T  41680975 atcacaacaacaagacatcaccatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttgatatcaatatctttca 41680876  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  41680875 caatatataaata 41680863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 21579998 - 21579917
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  21579998 tcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 21579917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 29763660 - 29763579
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  29763660 tcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 29763579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 42560319 - 42560238
Alignment:
Q  3 tcatatataacaattacaacttcatatcaaca-acttcacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  | |||||||||||||||||| |||||||||||| |||||||||||||||    
T  42560319 tcatatataacaattacaatttcatatcaacgtatttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 42560238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 42560331 - 42560268
Alignment:
Q  137 caataatattcttcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    |||||||| || ||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  42560331 caataataatcatcatatataacaattacaatttcatatcaacgtatttcacaatatataaata 42560268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 32807325 - 32807396
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaa 73  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||    
T  32807325 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 32807396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 41680914 - 41680833
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| || ||||||| | ||| |||||||||||||||| |||||||||||| |||||  ||||||||    
T  41680914 tcatatataacaattacaatttgatatcaatatctttcacaatatataaatattttcacatttaatcatcaatataaatcat 41680833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 39833870 - 39833942
Alignment:
Q  88 atcacaacagcaagacaa-catcatttaaacatatacaacaagtaaccaccaataatattcttcatatataac 159  Q
    |||||| ||||||| ||| ||||||||||||||||||| | |||||||| |||||||| ||||||||||||||    
T  39833870 atcacatcagcaaggcaatcatcatttaaacatatacagcgagtaaccatcaataataatcttcatatataac 39833942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 1327187 - 1327117
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatat 85  Q
    |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  1327187 attacaacttcatatcaacatcgttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcatat 1327117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 27472458 - 27472391
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| ||||||||||||||    
T  27472458 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 27472391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 38550153 - 38550086
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| ||||||||||||||    
T  38550153 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 38550086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 18760599 - 18760660
Alignment:
Q  7 atataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaat 67  Q
    ||||||| |||| ||||||||||||||| ||| |||||||||||||| | ||||||||||||    
T  18760599 atataaccattataacttcatatcaacatctttcacaatatataaatcttttcacatttaat 18760660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 39833931 - 39834013
Alignment:
Q  2 ttcatatataacaatta-caacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    |||||||||||| |||  |||||||||||||||||| |||||  |||||| || | |||||||||||| ||||| ||||||||    
T  39833931 ttcatatataaccatttgcaacttcatatcaacaacattcacgttatatagatcttttcacatttaatcatcaacgtaaatca 39834013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 22965748 - 22965804
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataata 144  Q
    |||| ||||||||||||||| ||||||||||||| || ||| | |||| ||||||||    
T  22965748 atcataacagcaagacaacaccatttaaacatatgcatcaaatcaccatcaataata 22965804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 38550226 - 38550114
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||| ||||||||||||| |||  ||  || |||| ||||| | || ||| |||| || ||  ||| ||| ||||||| ||||||| ||| |||||||    
T  38550226 atcacatcagcaagacaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttca 38550127  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  38550126 caatatataaata 38550114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 1565 - 1677
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||||| |||||||||||||||||||||||| || ||||| |||| |||||||| || || |||||||||||||||| ||||||| |||||||||||    
T  1565 atcacaacaacaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacgtctttca 1664  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  1665 caatatataaata 1677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 1629 - 1707
Alignment:
Q  6 tatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  1629 tatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 1707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 10894 - 11006
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||| ||||||||||||||||||||||||||||| || ||||| || | |||||||| || |||||||||||||||| || ||||||| |||||||||||    
T  10894 atcaaaacagcaagacaacatcatttaaacatatgcagcaagtcacaatcaataataatcatcatatataacaattaaaaattcatatcaacgtctttca 10993  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  10994 caatatataaata 11006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 10955 - 11036
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||||||||||||| || |||||||||||  ||| |||||||||||||||| |||||||||||| |||| ||||||||||    
T  10955 tcatatataacaattaaaaattcatatcaacgtctttcacaatatataaatattttcacatttaatcatcatagtaaatcat 11036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 14339 - 14451
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || || |||||||||||||||| ||||||| |||||||||||    
T  14339 atcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacgtctttca 14438  T
Q  188 caatatataaata 200  Q
    || ||||| ||||    
T  14439 cattatatgaata 14451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 14403 - 14481
Alignment:
Q  6 tatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||||||||||||  ||| |||| ||||| ||||| |||||||||||| |||||||||||||||    
T  14403 tatataacaattacaacttcatatcaacgtctttcacattatatgaatattttcacatttaatcatcaaagtaaatcat 14481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 24865623 - 24865511
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||| |||||||||||||||||||||||||| || ||||| |||| |||||||| || || |||||||||||||||| ||||||| ||| |||||||    
T  24865623 atcacaatagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacatctttca 24865524  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  24865523 caatatataaata 24865511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 22500988 - 22501100
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||| ||||||||| |||||||||||||||| || ||||| |||| ||||| || || || |||||||||||||||| ||||||| |||||||||||    
T  22500988 atcacaatagcaagacagcatcatttaaacatatgcagcaagttaccatcaatattaatcatcttatataacaattacaacttcatatcaacgtctttca 22501087  T
Q  188 caatatataaata 200  Q
    || ||||||||||    
T  22501088 cattatataaata 22501100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 22508922 - 22509034
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||| ||||||||| |||||||||||||||| || ||||| |||| ||||| || || || |||||||||||||||| ||||||| |||||||||||    
T  22508922 atcacaatagcaagacagcatcatttaaacatatgcagcaagttaccatcaatattaatcatcttatataacaattacaacttcatatcaacgtctttca 22509021  T
Q  188 caatatataaata 200  Q
    || ||||||||||    
T  22509022 cattatataaata 22509034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 24865559 - 24865481
Alignment:
Q  6 tatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  24865559 tatataacaattacaacttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 24865481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 22501052 - 22501130
Alignment:
Q  6 tatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||||||||||||  ||| |||| ||||||||||| |||||||||||| |||||||||||||||    
T  22501052 tatataacaattacaacttcatatcaacgtctttcacattatataaatattttcacatttaatcatcaaagtaaatcat 22501130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 22508986 - 22509064
Alignment:
Q  6 tatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||||||||||||  ||| |||| ||||||||||| |||||||||||| |||||||||||||||    
T  22508986 tatataacaattacaacttcatatcaacgtctttcacattatataaatattttcacatttaatcatcaaagtaaatcat 22509064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 2524521 - 2524440
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    |||||| |||||||||||| || ||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  2524521 tcatatgtaacaattacaatttgatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 2524440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 7672405 - 7672299
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||||||||||||| |||||||||||| ||| || ||||| |||| |||||||| || || ||||||      |||| ||||||| |||||||||||    
T  7672405 atcacaacagcaagacagcatcatttaaacgtatgcatcaagtcaccatcaataataatcatcttatata------acaacttcatatcaacgtctttca 7672312  T
Q  188 caatatataaata 200  Q
    |||||||||||||    
T  7672311 caatatataaata 7672299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 7672335 - 7672269
Alignment:
Q  18 acaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  7672335 acaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 7672269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 2524521 - 2524470
Alignment:
Q  149 tcatatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  2524521 tcatatgtaacaattacaatttgatatcaacgtctttcacaatatataaata 2524470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 22501146 - 22501194
Alignment:
Q  152 tatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  22501146 tatataacaattacaacttcatatcaacgtctttcacattatataaata 22501194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 22509080 - 22509128
Alignment:
Q  152 tatataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  22509080 tatataacaattacaacttcatatcaacgtctttcacattatataaata 22509128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 6576438 - 6576505
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||| | ||||| |||||| |||||    
T  6576438 atataaccattacaacttcatatcaacatctttcacaatatataaattttttcacttttaatcatcaa 6576505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 24883665 - 24883713
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatat 54  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  24883665 atataaccattacaacttcatatcaacatctttcacaatatataaatat 24883713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 6576373 - 6576484
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||||| |||||| || || |||| ||  |||| || ||||| | || ||| |||| || ||| ||||||| ||||||| ||||||| ||| |||||||    
T  6576373 atcacaatagcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattacaacttcatatcaacatctttca 6576472  T
Q  188 caatatataaat 199  Q
    ||||||||||||    
T  6576473 caatatataaat 6576484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 24436258 - 24436301
Alignment:
Q  156 taacaattacaatttcatattaacgtctttcacaatatataaat 199  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||    
T  24436258 taaccattacaatttcatatcaacatctttcacaatatataaat 24436301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 24883665 - 24883712
Alignment:
Q  153 atataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||||| ||||||| ||||||| ||| ||||||||||||||||||||    
T  24883665 atataaccattacaacttcatatcaacatctttcacaatatataaata 24883712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 22501146 - 22501195
Alignment:
Q  6 tatataacaattacaacttcatatcaacaac-ttcacaatatataaatat 54  Q
    ||||||||||||||||||||||||||||  | |||||| |||||||||||    
T  22501146 tatataacaattacaacttcatatcaacgtctttcacattatataaatat 22501195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 22509080 - 22509129
Alignment:
Q  6 tatataacaattacaacttcatatcaacaac-ttcacaatatataaatat 54  Q
    ||||||||||||||||||||||||||||  | |||||| |||||||||||    
T  22509080 tatataacaattacaacttcatatcaacgtctttcacattatataaatat 22509129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 24436258 - 24436321
Alignment:
Q  10 taacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    |||| ||||||| |||||||||||| | |||||||||||||||| | |||||||||||| |||||    
T  24436258 taaccattacaatttcatatcaacatctttcacaatatataaatct-ttcacatttaatcatcaa 24436321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 2410 - 2304
Alignment:
Q  69 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 168  Q
    |||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||||| || ||||||| |||     
T  2410 atcaaagtcaatcatattcatcacgacagcaagacagcatcatttaaacatatacaacaagtaaccatcattaataatcttcatgtacaacaatttcaac 2311  T
Q  169 ttcatat 175  Q
    |||||||    
T  2310 ttcatat 2304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 4675 - 4756
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  4675 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 4756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 197 - 308
Alignment:
Q  89 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcac 188  Q
    ||||||| ||||| ||||| |||| ||  |||| || ||||| | || |||||||| |  ||||||||||||||||||||||||||| ||||||||||||    
T  197 tcacaaccgcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcac 296  T
Q  189 aatatataaata 200  Q
    ||||||||||||    
T  297 aatatataaata 308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 4615 - 4726
Alignment:
Q  89 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttcac 188  Q
    ||||||| ||||| ||||| |||| ||  |||| || ||||| | || |||||||| |  ||||||||||||||||||||||||||| ||||||||||||    
T  4615 tcacaaccgcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcac 4714  T
Q  189 aatatataaata 200  Q
    ||||||||||||    
T  4715 aatatataaata 4726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 257 - 338
Alignment:
Q  3 tcatatataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||||||||||||| |||||||||||  ||| |||||||||||||||| ||||||| |||| |||||||||||||||    
T  257 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatataatcatcaaagtaaatcat 338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 36218 - 36140
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatat 85  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  36218 atataaccattacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcatat 36140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 36218 - 36171
Alignment:
Q  153 atataacaattacaatttcatattaacgtctttcacaatatataaata 200  Q
    ||||||| ||||||| ||||||| ||| ||||||||||||||||||||    
T  36218 atataaccattacaacttcatatcaacatctttcacaatatataaata 36171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 6839 - 6770
Alignment:
Q  15 attacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatcat 83  Q
    ||||||||| |||||||||  ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  6839 attacaactccatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 59393 - 59327
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    |||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||| |||||    
T  59393 atataacaattacaacttcatatcaacatctttcacaatatataaatct-ttcacatttaatcatcaa 59327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 59458 - 59347
Alignment:
Q  88 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatattaacgtctttca 187  Q
    ||||| |||||||| ||||| |||| ||| |||| || ||||| | || ||| |||| || ||  ||||||||||||||| ||||||| ||| |||||||    
T  59458 atcacgacagcaaggcaacaccattaaaaaatatgcagcaagtcaacatcaacaataatcatccaatataacaattacaacttcatatcaacatctttca 59359  T
Q  188 caatatataaat 199  Q
    ||||||||||||    
T  59358 caatatataaat 59347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 15515 - 15439
Alignment:
Q  7 atataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||||||||  ||||||||||||||||  || |||||||||||||||| |||||||||||| |||||  |||||||    
T  15515 atataacaatcgcaacttcatatcaacatttttcacaatatataaatattttcacatttaatcatcaacttaaatca 15439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 24573 - 24497
Alignment:
Q  7 atataacaattacaacttcatatcaacaactt-cacaatatataaatatgttcacatttaattatcaaagtaaatca 82  Q
    ||||||||||  ||||||||||||||||  || |||||||||||||||| |||||||||||| |||||  |||||||    
T  24573 atataacaatcgcaacttcatatcaacatttttcacaatatataaatattttcacatttaatcatcaacttaaatca 24497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 8446 - 8350
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatatttatcacaacagcaagacaacatcatt 112  Q
    ||||||||||||||||| || | |||||||||||||| |||  || |||| ||| |||||||||||||||||| ||||| ||| ||||||| |||||||    
T  8446 attacaacttcatatcatcatcattcacaatatataa-tattctctcatt-aatcatcaaagtaaatcatattcatcacgacaacaagacagcatcatt 8350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 362964 - 363033
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcata 84  Q
    |||||||||||||||||||| | |||| |||||||||||||  ||||| ||||| ||||||||||||||||    
T  362964 attacaacttcatatcaacatctttcaaaatatataaatattctcaca-ttaatcatcaaagtaaatcata 363033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 5536 - 5478
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    |||||||||||||||||||| | |||||||||||||||| | |||||||||||| |||||    
T  5536 attacaacttcatatcaacacctttcacaatatataaatct-ttcacatttaatcatcaa 5478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 11031 - 10961
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaaagtaaatcatat 85  Q
    |||||||||||||||||||| | || |||||||||||||||  ||||| | ||| |||||||||||||||||    
T  11031 attacaacttcatatcaacatcttttacaatatataaatattctcaca-taaatcatcaaagtaaatcatat 10961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 869 - 935
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    ||||||| |||||||||||||||||||| | |||||||||||| ||| | |||||||||||| |||||    
T  869 atataaccattacaacttcatatcaacatctttcacaatatattaatct-ttcacatttaatcatcaa 935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 3004 - 3053
Alignment:
Q  15 attacaacttcatatcaacaac-ttcacaatatataaatatgttcacatt 63  Q
    |||||||||||||||||||| | ||||||||||||||||||  |||||||    
T  3004 attacaacttcatatcaacatctttcacaatatataaatattctcacatt 3053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 76954 - 77019
Alignment:
Q  7 atataacaattacaacttcatatcaacaac-ttcacaatatataaatatgttcacatttaattatcaa 73  Q
    ||||||| |||||||||||||||| ||| | ||||||||||||||  || |||||||||||| |||||    
T  76954 atataaccattacaacttcatatccacatctttcacaatatataa--attttcacatttaatcatcaa 77019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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