View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6198_high_4 (Length: 217)

Name: NF6198_high_4
Description: NF6198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6198_high_4
NF6198_high_4
[»] chr4 (11 HSPs)
chr4 (16-209)||(2381241-2381434)
chr4 (16-211)||(2390873-2391062)
chr4 (19-149)||(2380046-2380176)
chr4 (17-145)||(2376161-2376289)
chr4 (16-71)||(2367678-2367733)
chr4 (17-82)||(2460600-2460665)
chr4 (96-136)||(2360929-2360969)
chr4 (17-136)||(2547535-2547654)
chr4 (17-72)||(6007668-6007723)
chr4 (16-81)||(2472094-2472159)
chr4 (17-73)||(2486310-2486366)
[»] chr1 (2 HSPs)
chr1 (16-82)||(15837954-15838020)
chr1 (24-78)||(9581944-9581998)
[»] chr8 (2 HSPs)
chr8 (17-62)||(32152209-32152254)
chr8 (16-107)||(39516859-39516950)
[»] chr5 (3 HSPs)
chr5 (17-66)||(32268773-32268822)
chr5 (17-72)||(17205959-17206014)
chr5 (17-62)||(41900267-41900312)
[»] chr3 (1 HSPs)
chr3 (17-61)||(513446-513490)
[»] chr7 (1 HSPs)
chr7 (26-72)||(15091356-15091402)
[»] chr6 (2 HSPs)
chr6 (17-62)||(7993319-7993364)
chr6 (19-60)||(28935578-28935619)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 2381434 - 2381241
Alignment:
Q  16 ggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2381434 ggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtat 2381335  T
Q  116 tcccatagctcatctggtaaacttgaacacgcttttgctgttgctgctgccgcggccattctttttggaaccttggatttggatgatgatgatg 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2381334 tcccataggtcatctggtaaacttgaacacgcttttgctgttgctgctgccgctgccattctttttggaaccttggatttggatgatgatgatg 2381241  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 2391062 - 2390873
Alignment:
Q  16 ggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtat 115  Q
    ||||||||||||| |||||||||| |||||||| ||||| |||||||| |||||||||||||||||  |||||||| |||  ||||||||||||||||||    
T  2391062 ggagaatcggagattgttggtgatggagagtaattgtttcgagacgatagaaagagacttgaaagtatagtggtcttcatcaaggaatttgatgatgtat 2390963  T
Q  116 tcccatagctcatctggtaaacttgaacacgcttttgctgttgctgctgccgcggccattctttttggaaccttggatttggatgatgatgatgtc 211  Q
    ||||| | ||||||||||||| |||||||| ||||||||||      | |||| |||||  |||||||||||||||||||||||||||||| ||||    
T  2390962 tcccacaactcatctggtaaatttgaacactcttttgctgt------ttccgctgccatcgtttttggaaccttggatttggatgatgatgctgtc 2390873  T

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Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 2380176 - 2380046
Alignment:
Q  19 gaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcc 118  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||  |||||||||||||||||||||    
T  2380176 gaatcggaaactgtaggtgatcgagagtaactgtttggagacgatggaaagagacttgacagtacagtggtctccatcaaggaatttgatgatgtattcc 2380077  T
Q  119 catagctcatctggtaaacttgaacacgctt 149  Q
    |||| ||||||||||||| ||||||| ||||    
T  2380076 cataactcatctggtaaatttgaacatgctt 2380046  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 2376289 - 2376161
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtatt 116  Q
    |||||||||| || ||||||||| ||||| ||   ||||||||||||||| |||||||| |||| |  || ||| ||   ||||||||||||||||||||    
T  2376289 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggcgaggaatttgatgatgtatt 2376190  T
Q  117 cccatagctcatctggtaaacttgaacac 145  Q
    |||||| ||||| |||||||  |||||||    
T  2376189 cccataactcatatggtaaatatgaacac 2376161  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 2367733 - 2367678
Alignment:
Q  16 ggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagag 71  Q
    |||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||    
T  2367733 ggagaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 2460600 - 2460665
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtg 82  Q
    |||||||||||||  |||||||| ||||| |||||||||||||| ||||| ||||| |||||||||    
T  2460600 gagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagatttgaaagtg 2460665  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 2360969 - 2360929
Alignment:
Q  96 tgaggaatttgatgatgtattcccatagctcatctggtaaa 136  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  2360969 tgaggaatttgatgatgtgttcccatagctcatctggtaaa 2360929  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 2547535 - 2547654
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtatt 116  Q
    ||||| ||||||| ||||||||| || || |||||||||||||||||||| || || || |||| |   | ||   ||||||||||||||| |||||  |    
T  2547535 gagaaccggagacggttggtgatggacagaaactgtttggagacgatggagagcgattttaaagcgtcctcgtagacattgaggaatttgaagatgtgct 2547634  T
Q  117 cccatagctcatctggtaaa 136  Q
    |||||| |||||||||||||    
T  2547635 cccataactcatctggtaaa 2547654  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 6007668 - 6007723
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 72  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||    
T  6007668 gagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagaga 6007723  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 2472094 - 2472159
Alignment:
Q  16 ggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagt 81  Q
    |||||||| |||||  |||||||| ||||  |||||||||||||| ||||||||||| ||||||||    
T  2472094 ggagaatcagagacgattggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagt 2472159  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 2486310 - 2486366
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagac 73  Q
    ||||||||||||| ||||||||| || || |||||||| ||||||| ||| ||||||    
T  2486310 gagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagagac 2486366  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 15838020 - 15837954
Alignment:
Q  16 ggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtg 82  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||| || || || ||||||||||||    
T  15838020 ggagaatcggagacggttggtgatggagagaaactgtttggagaccatcgagagggacttgaaagtg 15837954  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 9581944 - 9581998
Alignment:
Q  24 ggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaa 78  Q
    |||||| ||||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  9581944 ggagaccgttggtgatagagagaaactgtttggagacgacagaaagagacttgaa 9581998  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 32152209 - 32152254
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacga 62  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacga 32152254  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 39516859 - 39516950
Alignment:
Q  16 ggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttga 107  Q
    |||||||| ||||| ||||||||| | ||| || ||| ||||||||||||| |||||||||||||||  || ||| || | |||||||||||    
T  39516859 ggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagtgtggttgtcaccgtcgaggaatttga 39516950  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 32268773 - 32268822
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatgga 66  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgatgga 32268822  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 17205959 - 17206014
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 72  Q
    |||||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||    
T  17205959 gagaatcggaaactgtcggtgatagagagtaactgtttggagacgagggatagaga 17206014  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 41900312 - 41900267
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacga 62  Q
    |||||||| ||| |||||||||| ||||| ||||||||||||||||    
T  41900312 gagaatcgaagagtgttggtgatggagagaaactgtttggagacga 41900267  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 513490 - 513446
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacg 61  Q
    |||||||||||| |||||||||| |||||||||||||| ||||||    
T  513490 gagaatcggagattgttggtgatggagagtaactgttttgagacg 513446  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 15091402 - 15091356
Alignment:
Q  26 agactgttggtgatcgagagtaactgtttggagacgatggaaagaga 72  Q
    |||||||||||||| ||||| |||||||||||||||| ||| |||||    
T  15091402 agactgttggtgatggagaggaactgtttggagacgagggagagaga 15091356  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 7993364 - 7993319
Alignment:
Q  17 gagaatcggagactgttggtgatcgagagtaactgtttggagacga 62  Q
    ||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  7993364 gagaatcggagacggctggtgatggagaggaactgtttggagacga 7993319  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 28935578 - 28935619
Alignment:
Q  19 gaatcggagactgttggtgatcgagagtaactgtttggagac 60  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  28935578 gaatcggagactgttggtgatagagaggaactgtttcgagac 28935619  T

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