View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6198_low_3 (Length: 332)
Name: NF6198_low_3
Description: NF6198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6198_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 5583640 - 5583322
Alignment:
| Q |
10 |
catcatcagtggctaatacaattcaaatggaagtggcagaaaccatggaaactttctgaacggattcgacacagtgatgaaacgatgatgagagcaaggc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5583640 |
catcatcagtggctaatacaattcaaatggaagtggcagaaaccatggaaactttctgaacggattcgacacagtgatgagacgatgatgagagcaaggc |
5583541 |
T |
|
| Q |
110 |
cacgttcacatactttgcctcaaatcaagtgaatttgatagttagcgtgatcagccatttgtcttggcttagatttcactatatttcttacaacagtgat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5583540 |
cacgttcacatactttgcctcaaatcaagtgaatttgatagttagcgtgatcagccatttgtcttggcttagatttcactatatttcttacaacagtgat |
5583441 |
T |
|
| Q |
210 |
cctagacacaagacatagaaagaacatttagctaagtacaggtaataaccctttacttgtttatttatttaaacaacttcaagccttgcgccatacgcgc |
309 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5583440 |
cctagacacaagacatagaaagaacatttaactaagtacaggtaataaccctttacttgtttatttatttaaacaacttcaagccttgcgccatacgctc |
5583341 |
T |
|
| Q |
310 |
tttcaaattatattcttcg |
328 |
Q |
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||||||||||||||||||| |
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| T |
5583340 |
tttcaaattatattcttcg |
5583322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 47089290 - 47089421
Alignment:
| Q |
10 |
catcatcagtggctaatacaattcaaatggaagtggcagaaaccatggaaactttctgaacggattcgacacagtgatgaaacgatgatgagagcaaggc |
109 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| || || ||||||||||| | |
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| T |
47089290 |
catcatcagtggctattgcaattcaaatggaagtggcagaaaccatggaaactttcagaattgattcgacacagtgatgagacaattatgagagcaagac |
47089389 |
T |
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| Q |
110 |
cacgttcacatactttgcctcaaatcaagtga |
141 |
Q |
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| || ||||| ||||||| || |||| |||| |
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| T |
47089390 |
cgcgctcacaggctttgccacacatcatgtga |
47089421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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