View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_high_1 (Length: 566)
Name: NF6199_high_1
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 32617968 - 32618421
Alignment:
| Q |
18 |
tttctagatgaaatgcgaagggagctaacgttacagcagcgatggcattccggtaaacgatgaaaacataatggctcatgcctttcttgatagcatccat |
117 |
Q |
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| T |
32617968 |
tttctagatgaaatgcgaagggagctaacgttacagcagcgatggcattccggtaaacgatgaaaacataatggctcatgcctttcttgatagcatccat |
32618067 |
T |
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| Q |
118 |
ggcaaaaatgaacataccagcagaaccaaattgaacagctaacaatagtagatatggctttgcatttttcaaccacgcacccatttttgaatctctctat |
217 |
Q |
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| T |
32618068 |
ggcaaaaatgaacataccagcagaaccaaattgaacagccaacaatagtagatatggctttgcatttttcaaccacgcacccatttttgaatctctctat |
32618167 |
T |
|
| Q |
218 |
tactctcctgggtgcttagcaatgtgaaattgctaatgtggctatgctgtgatattgtacattagtgcagaaggcattctgaatatttataaccaaccat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32618168 |
tactctcctgggtgcttagcaatgtgaaattgctaatgtggctatgctgtgatattgtacattagtgcagaaggcattgtgaatatttataaccaaccat |
32618267 |
T |
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| Q |
318 |
taaattaaatataacagtgcatttaaaattattgaaaaattgatcataatttcagcaatcaacactttgcatgctgactcataatccaaattaataggaa |
417 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
32618268 |
taaattaaatataacagtgcatttaaaataattgaaaaattgatcataatttcagcaagcaacaatttgcatgctgactcataatccaaattaagaggag |
32618367 |
T |
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| Q |
418 |
taacaagttgtctagttctacatatgtctatgccttgaatttggcatctgtgaa |
471 |
Q |
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| T |
32618368 |
taacaagttgtctagttctatatatgtctatgacttgaatttggcatctgtgaa |
32618421 |
T |
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