View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_high_10 (Length: 358)
Name: NF6199_high_10
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 4517811 - 4517666
Alignment:
| Q |
156 |
aagactagagcattcttctttaacataaatttagagcatttagttaaataatacatttgaattcagaacatttggttgaacaatagaattgaataaatac |
255 |
Q |
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| T |
4517811 |
aagactagagcattcttctttaacataaatttagagcatttggttaaataatacatttgaattcagaacatttggttgaacaatagaattgaataaatac |
4517712 |
T |
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| Q |
256 |
ggcattcagtgaaattcctttcatatgaatataataatacattgaa |
301 |
Q |
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| T |
4517711 |
ggtattcagtgaaattcctttcatatgaatataataatacattgaa |
4517666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4518535 - 4518467
Alignment:
| Q |
1 |
atctagcatcattgtgaaggagcattcaacgtgaaccttttccataagtgtctaagatttgaatgtgca |
69 |
Q |
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| T |
4518535 |
atctagcatcattgtgaatgagcattcaacgtgaaccttttccataagtgtctaagatttgaatgtgca |
4518467 |
T |
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