View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6199_high_12 (Length: 299)

Name: NF6199_high_12
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6199_high_12
NF6199_high_12
[»] chr3 (5 HSPs)
chr3 (38-283)||(28204741-28204990)
chr3 (52-96)||(49787249-49787293)
chr3 (37-96)||(20432189-20432248)
chr3 (56-94)||(1814828-1814866)
chr3 (37-95)||(33329611-33329669)
[»] chr6 (5 HSPs)
chr6 (52-96)||(26311395-26311439)
chr6 (14-96)||(30349348-30349430)
chr6 (43-95)||(17248636-17248688)
chr6 (47-101)||(2853682-2853736)
chr6 (37-91)||(20474960-20475014)
[»] chr7 (4 HSPs)
chr7 (37-96)||(35250118-35250177)
chr7 (42-94)||(17876174-17876226)
chr7 (52-96)||(41243643-41243687)
chr7 (54-96)||(17931999-17932041)
[»] chr8 (3 HSPs)
chr8 (54-96)||(27545343-27545385)
chr8 (54-92)||(41487482-41487520)
chr8 (37-95)||(45177201-45177259)
[»] chr5 (2 HSPs)
chr5 (54-96)||(27904756-27904798)
chr5 (54-95)||(40132904-40132945)
[»] chr4 (5 HSPs)
chr4 (54-95)||(20112422-20112463)
chr4 (47-93)||(8070630-8070676)
chr4 (54-96)||(21451458-21451500)
chr4 (54-95)||(2653953-2653994)
chr4 (54-94)||(21957740-21957780)
[»] chr2 (5 HSPs)
chr2 (37-97)||(19399431-19399491)
chr2 (37-96)||(6592723-6592782)
chr2 (54-96)||(34679096-34679138)
chr2 (55-92)||(4576546-4576583)
chr2 (46-86)||(8553803-8553843)
[»] chr1 (4 HSPs)
chr1 (37-96)||(17760947-17761006)
chr1 (54-96)||(3377500-3377542)
chr1 (55-96)||(8009989-8010030)
chr1 (54-95)||(14978797-14978838)
[»] scaffold0372 (1 HSPs)
scaffold0372 (54-96)||(123-165)
[»] scaffold0250 (1 HSPs)
scaffold0250 (56-94)||(3573-3611)
[»] scaffold1458 (1 HSPs)
scaffold1458 (55-96)||(1470-1511)
[»] scaffold0194 (1 HSPs)
scaffold0194 (55-96)||(25168-25209)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 28204741 - 28204990
Alignment:
38 ttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcctgatttatacttcatnnnnnnnnnnnnngttgt----tggtt 133  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||             |||||    |||||    
28204741 ttaagagatcaaagttacaactttgtaaaagttagaaggctaaaactgctattaaacctgatttatacttcataaaaagaaaaaaagttgtcgcgtggtt 28204840  T
134 tgatgatgcaaaaatttatgtttttgtacggtaccttgctacatgcgttatctagtcccgtattcaatttctaaatcaaacagggtataaaaaatttgtt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||    
28204841 tgatgatgcaaaaatttatgtttttgtacggtaccttgctacatgtgttatctagtcccgtattcaatttctaaatcaaatatggtataaaaaatttgtt 28204940  T
234 cagtcttaccatatgtttgacaaactccatttttagtatattgtgttttt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
28204941 cagtcttaccatatgtttgacaaactccatttttagtatattgtgttttt 28204990  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 49787293 - 49787249
Alignment:
52 ttgcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||    
49787293 ttgcaactttggaaaagttagagggctaaaattgctattaagcct 49787249  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 20432248 - 20432189
Alignment:
37 cttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    |||| |||| |||||| ||||||| |||||||||||  ||| ||||||||||||||||||    
20432248 cttaggggaccaaagtcgcaacttcgtaaaagttagggggcaaaaactgctattaagcct 20432189  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 1814828 - 1814866
Alignment:
56 aactttgtaaaagttagaaggctaaaactgctattaagc 94  Q
    ||||||| ||||||||| |||||||||||||||||||||    
1814828 aactttggaaaagttaggaggctaaaactgctattaagc 1814866  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 33329669 - 33329611
Alignment:
37 cttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcc 95  Q
    |||| ||| ||||| | ||||||| |||||||||||| ||| |||||||||||||||||    
33329669 cttagggggtcaaaatcgcaacttcgtaaaagttagagggcgaaaactgctattaagcc 33329611  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 26311439 - 26311395
Alignment:
52 ttgcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
26311439 ttgcaactttgtaaaagttaggaggctaaaactgttattaagcct 26311395  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 30349430 - 30349348
Alignment:
14 aggggcggttttgtagnnnnnnncttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||||||||||       |||| ||| ||||| | |||||||||  ||||||||| ||||||||||||||||||||||    
30349430 aggggcggttttgtagtttttttcttaggggctcaaaatcgcaactttgggaaagttagagggctaaaactgctattaagcct 30349348  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 17248688 - 17248636
Alignment:
43 ggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcc 95  Q
    |||||||| | ||||||||  ||||||||| ||||||||||||||||||||||    
17248688 ggatcaaaatcgcaactttaaaaaagttaggaggctaaaactgctattaagcc 17248636  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 2853682 - 2853736
Alignment:
47 caaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcctgattt 101  Q
    |||| |||||||||||  |||||||| ||| ||||||||||||||||||| ||||    
2853682 caaaattgcaactttgagaaagttaggaggttaaaactgctattaagcctaattt 2853736  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 20474960 - 20475014
Alignment:
37 cttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctatta 91  Q
    |||||||||||||| | ||||||||| |||||||||  |||||||| ||||||||    
20474960 cttaagggatcaaaatcgcaactttgaaaaagttagggggctaaaattgctatta 20475014  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 35250177 - 35250118
Alignment:
37 cttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||| |||| | ||||||||| |||||||||| |||||||||| |||||||||||    
35250177 cttaagggaccaaaatcgcaactttggaaaagttagagggctaaaactactattaagcct 35250118  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 17876226 - 17876174
Alignment:
42 gggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagc 94  Q
    ||||||||| | ||||||||| ||||||||||| ||||||| |||||||||||    
17876226 gggatcaaaatcgcaactttggaaaagttagaaagctaaaattgctattaagc 17876174  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 41243687 - 41243643
Alignment:
52 ttgcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||    
41243687 ttgcaactttggaaaagttagggggctaaaactgctattaagcct 41243643  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 17931999 - 17932041
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||| |||||| || |||||||||||||||||||||||    
17931999 gcaactttggaaaagtgaggaggctaaaactgctattaagcct 17932041  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 27545385 - 27545343
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
27545385 gcaactttggaaaagttagacggctaaaactgctattaagcct 27545343  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 41487482 - 41487520
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaa 92  Q
    ||||||||| |||||||||| ||||||||||||||||||    
41487482 gcaactttggaaaagttagagggctaaaactgctattaa 41487520  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 45177259 - 45177201
Alignment:
37 cttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcc 95  Q
    |||| ||||||||| | |||||||||  |||||||| |||||||| |||||||||||||    
45177259 cttaggggatcaaaatcgcaactttgagaaagttaggaggctaaatctgctattaagcc 45177201  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 27904756 - 27904798
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
27904756 gcaactttgaaaaagttagagggctaaaactgctattaagcct 27904798  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 40132945 - 40132904
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcc 95  Q
    ||||||||| |||||||||| | |||||||||||||||||||    
40132945 gcaactttgaaaaagttagaggactaaaactgctattaagcc 40132904  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 20112422 - 20112463
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcc 95  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
20112422 gcaactttggaaaagttagaaggctaaaactgttattaagcc 20112463  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 8070676 - 8070630
Alignment:
47 caaagttgcaactttgtaaaagttagaaggctaaaactgctattaag 93  Q
    |||||||||||||||| |||||||||  || ||||||||||||||||    
8070676 caaagttgcaactttggaaaagttagggggttaaaactgctattaag 8070630  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 21451500 - 21451458
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    |||||||||  |||||||| |||||||||||||||||||||||    
21451500 gcaactttgagaaagttaggaggctaaaactgctattaagcct 21451458  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 2653994 - 2653953
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcc 95  Q
    ||||||| ||||||||||| |||| |||||||||||||||||    
2653994 gcaacttcgtaaaagttaggaggcaaaaactgctattaagcc 2653953  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 21957740 - 21957780
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagc 94  Q
    ||||||||| |||||||||  ||||||||||||||||||||    
21957740 gcaactttggaaaagttagggggctaaaactgctattaagc 21957780  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 19399431 - 19399491
Alignment:
37 cttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcctg 97  Q
    ||||||||| |||| |  |||||||| |||||||||  |||||||||||||||||||||||    
19399431 cttaagggaccaaaatcacaactttgaaaaagttagggggctaaaactgctattaagcctg 19399491  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 6592782 - 6592723
Alignment:
37 cttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    |||| ||| ||||| | ||||||||| |||||||||  ||||||||||||||||||||||    
6592782 cttagggggtcaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcct 6592723  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 34679138 - 34679096
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||| |||||||||  ||||||||||||||||||||||    
34679138 gcaactttggaaaagttagggggctaaaactgctattaagcct 34679096  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 4576583 - 4576546
Alignment:
55 caactttgtaaaagttagaaggctaaaactgctattaa 92  Q
    |||||||| ||||||||| |||||||||||||||||||    
4576583 caactttgaaaaagttaggaggctaaaactgctattaa 4576546  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 8553803 - 8553843
Alignment:
46 tcaaagttgcaactttgtaaaagttagaaggctaaaactgc 86  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
8553803 tcaaaattgcaactttgaaaaagttagaaggctaaacctgc 8553843  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 17760947 - 17761006
Alignment:
37 cttaagggatcaaagttgcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    |||| ||||||||| ||||||||| ||||||||||  || | ||||||||||||||||||    
17760947 cttaggggatcaaaattgcaacttcgtaaaagttaagagacgaaaactgctattaagcct 17761006  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 3377542 - 3377500
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||| |||||||||  ||||||||||||||||||||||    
3377542 gcaactttggaaaagttagggggctaaaactgctattaagcct 3377500  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 8009989 - 8010030
Alignment:
55 caactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    |||||| ||||||||||| ||||||||||| |||||||||||    
8009989 caacttcgtaaaagttaggaggctaaaactactattaagcct 8010030  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 14978838 - 14978797
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcc 95  Q
    ||||||||| |||||||||  |||||||||||||||||||||    
14978838 gcaactttggaaaagttagggggctaaaactgctattaagcc 14978797  T

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Target: scaffold0372 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 165 - 123
Alignment:
54 gcaactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    |||||||||  |||||||| |||||||||||||||||||||||    
165 gcaactttgagaaagttaggaggctaaaactgctattaagcct 123  T

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Target: scaffold0250 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 3611 - 3573
Alignment:
56 aactttgtaaaagttagaaggctaaaactgctattaagc 94  Q
    |||||||| ||||||||||||| ||||||||||||||||    
3611 aactttgtgaaagttagaaggcgaaaactgctattaagc 3573  T

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Target: scaffold1458 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 1511 - 1470
Alignment:
55 caactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
    ||||||||| ||||||||  ||||||||||||||||||||||    
1511 caactttgtgaaagttagggggctaaaactgctattaagcct 1470  T

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Target: scaffold0194 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 25168 - 25209
Alignment:
55 caactttgtaaaagttagaaggctaaaactgctattaagcct 96  Q
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25168 caactttagaaaagttagaaggctaaaactgctattatgcct 25209  T

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