View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_high_2 (Length: 518)
Name: NF6199_high_2
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 143 - 513
Target Start/End: Complemental strand, 37584037 - 37583663
Alignment:
| Q |
143 |
tctcaagaagcagaagaaattcaggttaacatgtgttattgttggatatttttt---gtgtgactttggcttcatgcacaatattaaacacaactccaaa |
239 |
Q |
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| T |
37584037 |
tctcaagaagcagaagaaattcaggttaacatgtgttattgttggatatttttttttgtgtgactttggcttcatgcacaatattaaatacaactccaaa |
37583938 |
T |
|
| Q |
240 |
tataatgccattttaagtttgt-gtatctgtcactgccgcacaggattatataactagtttagaacggctcgcaaaactgaaggtgctggatttgtttca |
338 |
Q |
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|||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37583937 |
tataatgccattttaagttttttgtatctgtcactgccacacaggattatataactagtttagaacggctcgcaaaaccgaaggtgctggatttgtttca |
37583838 |
T |
|
| Q |
339 |
aaaaagatatttgcgctgagtcacggcaggtaactaaaattccatttttgatatcagttcattttcttcaatgctgtgtgtggaaaatgatagtttattt |
438 |
Q |
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| T |
37583837 |
aaaaagatatttgcgctgagtcacggcaggtaactaaaattccacttttgatatcagttccttttcttcaatgctgtgtgtggaaaatgatagtttattt |
37583738 |
T |
|
| Q |
439 |
tccactttctcatattgttgtattaaacaaatctcatgtgatttccaatcaaaattttaatcttcctatgtttct |
513 |
Q |
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| T |
37583737 |
tccactttctcatattgttgtattaaacaaatctcatgtgatttccaatcaaaattttaatcttcctatttttct |
37583663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 28 - 503
Target Start/End: Complemental strand, 37590541 - 37590060
Alignment:
| Q |
28 |
attatcatatcaagagtgctatgtaccaaccaaataatgactgcaggcaaagagaggacgcacaaaagattttgtggcagcattgcaaatacttcgtggt |
127 |
Q |
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| T |
37590541 |
attatcatatcaagagtgctaagtactgaccaaataatgactgcaggcaaagagaggacgcgcgaaagattctgtggaagcattgcaaatacttcgtgga |
37590442 |
T |
|
| Q |
128 |
aaaggtgctgatatatctcaagaagcagaagaaattcaggttaacatgtgttattgttggatattttttgtgtgactttg-------gcttcatgcacaa |
220 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||| |||| |
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| T |
37590441 |
aaagatgctgatgtatctcaagaagcagaagaaattcaggttaacatgtgttattgttggatatatttc-tgtgaccttgccttcaggcttcatgtacaa |
37590343 |
T |
|
| Q |
221 |
tattaaacacaac--tccaaatataatgccattttaagtttgtgtatctgtcactgccgcacaggattatataactagtttagaacggctcgcaaaactg |
318 |
Q |
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| T |
37590342 |
tgtcaaagacagagttccaaatataatgccgttttaagttggtgtatctttcactgccacacaggattatataactagtttagaacggctcgcaaaaccg |
37590243 |
T |
|
| Q |
319 |
aaggtgctggatttgtttcaaaaaagatatttgcgctgagtcacggcaggtaactaaaattccatttttgatatcagttcattttcttcaatgc-tgtgt |
417 |
Q |
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|| | ||||||||||||||| |||||||||||||||| | |||||| |||||| || ||||||| ||||||||| ||||| ||||||| || || | ||| |
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| T |
37590242 |
aatgggctggatttgtttcagaaaagatatttgcgctcactcacggtaggtaattataattccacttttgatattagttcgttttctttaaggcttttgt |
37590143 |
T |
|
| Q |
418 |
gtggaaaatgatagtttattttccactttctcatattgttgtattaaacaaatctcatgtgatttccaatcaaaattttaatcttc |
503 |
Q |
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| T |
37590142 |
atggaaaatgatagttcattttccaccttctcata---ttgtattaaggaaatctcatgtgatttccaatcaaaattttcatcttc |
37590060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 36 - 409
Target Start/End: Original strand, 37463538 - 37463914
Alignment:
| Q |
36 |
atcaagagtgctatgtaccaaccaaataatgactgcaggcaaagagaggacgcacaaaagattttgtggcagcattgcaaatacttcgtggtaaaggtgc |
135 |
Q |
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| T |
37463538 |
atcaagagtaccaagtaccaaccaaataatgaatgcaggcaaagcgaggacacgcaaaagattttgtggcagcattacaaatactacgcggtaaagatgc |
37463637 |
T |
|
| Q |
136 |
tgatatatctcaagaagcagaagaaattcaggttaacatgtgttattgttggatattttt--tgtgtgactttggcttcatgcacaatattaaacacaac |
233 |
Q |
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|||||||||| |||| |||| |||||||||||||| ||||| | ||||||||||| || | ||| | ||| |||||||||||||||| || |||| |
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| T |
37463638 |
tgatatatctgaagaggcaggagaaattcaggttactgtgtgt-agtgttggatattattattatgtagccttgccttcatgcacaatattgaagacaaa |
37463736 |
T |
|
| Q |
234 |
----tccaaatataatgccattttaagtttgtgtatctgtcactgccgcacaggattatataactagtttagaacggctcgcaaaactgaaggtgctgga |
329 |
Q |
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| T |
37463737 |
gaattccaaatataatgcaatt--aagccggtgtatatgtcactgccacacaggattatataactagtttagaacagctcgcgaaaccgaaggtgctgga |
37463834 |
T |
|
| Q |
330 |
tttgtttcaaaaaagatatttgcgctgagtcacggcaggtaactaaaattccatttttgatatcagttcattttcttcaa |
409 |
Q |
| |
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||||||||||| |||||||||||||| | |||||| | ||| ||| ||||||| | | |||||||||||||||||||||| |
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| T |
37463835 |
tttgtttcaaagaagatatttgcgctcactcacggtatgtagctataattccactctggatatcagttcattttcttcaa |
37463914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 37584613 - 37584741
Alignment:
| Q |
15 |
aaattatgaagtgattatcatatcaagagtgctatgtaccaaccaaataatgactgcaggcaaagagaggacgcacaaaagattttgtggcagcattgca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37584613 |
aaattatgaagtgattatcatatcaagagtgctatgtaccgaccaaataatgactgcaggcaaagagaggacgcacaaaagattttgtggcagcattgca |
37584712 |
T |
|
| Q |
115 |
aatacttcgtggtaaaggtgctgatatat |
143 |
Q |
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| T |
37584713 |
aatacttcgtggtaaaggtgctgatatat |
37584741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 49020960 - 49020996
Alignment:
| Q |
319 |
aaggtgctggatttgtttcaaaaaagatatttgcgct |
355 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||| |
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| T |
49020960 |
aaggtgctggatttatttcaaagaagatatttgcgct |
49020996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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