View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_high_26 (Length: 228)
Name: NF6199_high_26
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_high_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28191444 - 28191669
Alignment:
| Q |
1 |
tatttggcagcaggttatctctatcatcgacaaagaaaactttgagctaattaaggtatttttgagcaatgttgtccgtaattctaatttggaatctcaa |
100 |
Q |
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| T |
28191444 |
tatttggcaacaggttatctctatcatcgacaaagaaaactttgagctaattaaggtatttttgagcaatgttgtccgtaattctaatttggaatctcaa |
28191543 |
T |
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| Q |
101 |
ttggtttcttttcgttggaggttgaaccatcaaaattaattatttctttctccttgtccttcctattttatattttgttgtcacgtttcttttgttcttg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28191544 |
ttggcttcttttcgttggaggttgaaccatcaaaattaattatttctttctccttctccttcctattt--tattttgttgtcacgtttcttttgttcttg |
28191641 |
T |
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| Q |
201 |
catggttttcctcctatcaatcagcaat |
228 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
28191642 |
catggttttcctcctatcgatcagcaat |
28191669 |
T |
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