View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_high_27 (Length: 223)
Name: NF6199_high_27
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 45153088 - 45153164
Alignment:
| Q |
128 |
aggtgtctatgatggttatgagaaagtgttgtactttcagtaagagagtaatgaaagagcaaaacaagggttagtag |
204 |
Q |
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| T |
45153088 |
aggtgtctatgatggttatgagaaagtgttgtactttcagtaagagagtaatgaaagagcaaaacaagggttagtag |
45153164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 45152975 - 45153015
Alignment:
| Q |
15 |
aatatccatatagatataggtaaaatgggtcacaccttaag |
55 |
Q |
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| T |
45152975 |
aatatccatatagatataggtaaaatgggtcacaccttaag |
45153015 |
T |
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