View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_high_3 (Length: 490)
Name: NF6199_high_3
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 258 - 483
Target Start/End: Complemental strand, 4201153 - 4200928
Alignment:
| Q |
258 |
tagggtttagttcatattcaattttgttcaattcaattgaattcgattttcaatgatgatggaaggagcaagcaatggaggaatgttgtatcacgaggta |
357 |
Q |
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| T |
4201153 |
tagggtttagttcatattcaattttgttcaattcaattgaattcgattttcaatgatgatggaaggagcaagcaatggaggaatgttgtatcacgaggta |
4201054 |
T |
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| Q |
358 |
caagaatcgaagctttgcgctgttcattgcgtcaacactgttcttcaaggtccgtttttctctgaattcgacttggctgctcttgcttctgatctcgatt |
457 |
Q |
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| T |
4201053 |
caagaatcgaagctttgcgctgttcattgcgtcaacactgttcttcaaggtccgtttttctctgaatttgacttggctgctcttgcttctgatctcgatt |
4200954 |
T |
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| Q |
458 |
gcaaagagaggcagatgatgatgatg |
483 |
Q |
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| T |
4200953 |
gcaaagagaggcagatgatgatgatg |
4200928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 4201258 - 4201211
Alignment:
| Q |
154 |
gacctcttttaatttccaaatcttcttcc-tttctcgtcttctgcaac |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4201258 |
gacctcttttaatttccaaatcttcttccttttctcgtcttctgcaac |
4201211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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