View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6199_high_7 (Length: 393)
Name: NF6199_high_7
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6199_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 116 - 383
Target Start/End: Original strand, 8406972 - 8407239
Alignment:
| Q |
116 |
aaggtggtatgcaatatttatatgccaaagagaatgggaaggggtcaaaatcaaataaggaaactatgattgaccaattgaattaattaaaaattgacat |
215 |
Q |
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| T |
8406972 |
aaggtggtatgcaatatttatatgccaaagagaatgggaaggggtcaaaatcaaataaggaaactatgattgaccaattgaattaattaaaaattgacat |
8407071 |
T |
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| Q |
216 |
agtctctattcaaaattccaagccttgtgtatgttgggtggtctcaacatgcaacgttgtacaaataaaaccacaattaaggctgcgttacatgcaagaa |
315 |
Q |
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| T |
8407072 |
agtctctattcaaaattccaagccttgtgtatgttgggtggtctcaacatgcaacgttgtacaaataaaaccacaattaaggctgcgttacatgcaagaa |
8407171 |
T |
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| Q |
316 |
ttatgaaactacgtagtagcttggtaattagcctgcaacaaaggctatggactttttctctatttcat |
383 |
Q |
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| T |
8407172 |
ttatgaaactaagtagtagcttggtaattagcatgcaacaaaggctatggactttttctctatttcat |
8407239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 116 - 383
Target Start/End: Original strand, 8432050 - 8432317
Alignment:
| Q |
116 |
aaggtggtatgcaatatttatatgccaaagagaatgggaaggggtcaaaatcaaataaggaaactatgattgaccaattgaattaattaaaaattgacat |
215 |
Q |
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| T |
8432050 |
aaggtggtatgcaatatttatatgccaaagagaatgggaaggggtcaaaatcaaataaggaaactatgattgaccaattgaattaattaaaaattgacat |
8432149 |
T |
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| Q |
216 |
agtctctattcaaaattccaagccttgtgtatgttgggtggtctcaacatgcaacgttgtacaaataaaaccacaattaaggctgcgttacatgcaagaa |
315 |
Q |
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| T |
8432150 |
agtctctgttcaaaattccaagccttgtgtatgttgggtggtctcaacatgcaacgttgtacaaataaaaccacaattaaggctgcgttacatgcaagaa |
8432249 |
T |
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| Q |
316 |
ttatgaaactacgtagtagcttggtaattagcctgcaacaaaggctatggactttttctctatttcat |
383 |
Q |
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| T |
8432250 |
ttatgaaactaagtagtagcttggtaattagcatgcaacaaaggctatggactttttctctatttcat |
8432317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8406854 - 8406925
Alignment:
| Q |
1 |
acaaattaataatatttgaaggtgtttgctttgtgttaatttaggatagtgtatagttggggaaataaaaag |
72 |
Q |
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| T |
8406854 |
acaaattaataatatttgaaggtgtttgctttgtgttaatttaggatagtgtatagttggggaaataaaaag |
8406925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8431935 - 8432006
Alignment:
| Q |
1 |
acaaattaataatatttgaaggtgtttgctttgtgttaatttaggatagtgtatagttggggaaataaaaag |
72 |
Q |
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| T |
8431935 |
acaaattaataatatttgaagatgtttgctttgtgttaatttaggatagtgtatagttggggaaataaaaag |
8432006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 8413187 - 8413236
Alignment:
| Q |
298 |
ctgcgttacatgcaagaattatgaaactacgtagtagcttggtaattagc |
347 |
Q |
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| T |
8413187 |
ctgcgttacatgcaagaaaaacgaaactacgtagtagcttggtaattagc |
8413236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 8435285 - 8435334
Alignment:
| Q |
298 |
ctgcgttacatgcaagaattatgaaactacgtagtagcttggtaattagc |
347 |
Q |
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| T |
8435285 |
ctgcgttacatgcaagaaaaacgaaactacgtagtagcttggtaattagc |
8435334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 8378235 - 8378199
Alignment:
| Q |
311 |
aagaattatgaaactacgtagtagcttggtaattagc |
347 |
Q |
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||||| || |||||||||||||||||||||||||||| |
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| T |
8378235 |
aagaaatacgaaactacgtagtagcttggtaattagc |
8378199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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