View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6199_high_9 (Length: 366)

Name: NF6199_high_9
Description: NF6199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6199_high_9
NF6199_high_9
[»] chr6 (4 HSPs)
chr6 (22-352)||(1852494-1852824)
chr6 (38-115)||(8010259-8010338)
chr6 (37-93)||(24774682-24774741)
chr6 (38-93)||(13360659-13360717)
[»] chr5 (1 HSPs)
chr5 (36-93)||(35095869-35095929)
[»] chr3 (2 HSPs)
chr3 (35-70)||(45535367-45535402)
chr3 (36-93)||(50016044-50016104)
[»] chr2 (4 HSPs)
chr2 (35-70)||(19629249-19629284)
chr2 (35-70)||(19826150-19826185)
chr2 (37-93)||(37053518-37053577)
chr2 (36-94)||(38355142-38355202)
[»] scaffold0654 (1 HSPs)
scaffold0654 (36-93)||(6723-6783)
[»] scaffold0014 (1 HSPs)
scaffold0014 (36-93)||(116642-116702)
[»] chr8 (1 HSPs)
chr8 (36-93)||(14482126-14482186)
[»] chr4 (2 HSPs)
chr4 (74-120)||(24160622-24160668)
chr4 (36-77)||(4071825-4071866)
[»] scaffold0590 (1 HSPs)
scaffold0590 (37-98)||(1161-1225)
[»] scaffold0275 (1 HSPs)
scaffold0275 (37-98)||(2750-2814)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 352
Target Start/End: Original strand, 1852494 - 1852824
Alignment:
Q  22 tacatggaaagcatatttgactttaatttatttttcgttatagaaatagttatataagcacttatatgataaacgttcaattaaattgtttatcggaacg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1852494 tacatggaaagcatatttgactttaatttatttttcgttatagaaatagttatataagcacttatatgataaacgttcaattaaattgtttatcggaacg 1852593  T
Q  122 taaccctaaactctatgacatgctttttgaataggggtaacaaccattgcaggtggaggaaaaagaggccaattaggaggccatgttgatggtccaagtg 221  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1852594 taaccctaaactctatgacatgctttttgtataggggtaacaaccattgcaggtggaggaaaaagaggccaattaggaggccatgttgatggtccaagtg 1852693  T
Q  222 aggatgcaaagttttcaaatgattttgatttaatttatgctagaagtagttgctctcttttggtggttgatagaggaaatcaagcaattagagagataca 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1852694 aggatgcaaagttttcaaatgattttgatttaatttatgctagaagtagttgctctcttttggtggatgatagaggaaatcaagcaattagagagataca 1852793  T
Q  322 actcaatcaagatgattgcattactagtact 352  Q
    |||||||||||||||||||||||||||||||    
T  1852794 actcaatcaagatgattgcattactagtact 1852824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 8010338 - 8010259
Alignment:
Q  38 ttgactttaatttatttttcgttatagaaatag-ttata--taagcacttatatgataaacgttcaattaaattgtttatc 115  Q
    ||||||||| |||||| || ||||||||||||| |||||  ||||||||||||||||||||  | |||||| |||||||||    
T  8010338 ttgactttattttattgtt-gttatagaaatagcttatacctaagcacttatatgataaacacttaattaagttgtttatc 8010259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 24774741 - 24774682
Alignment:
Q  37 tttgactttaatttatttttcgttatagaaatagt---tatataagcacttatatgataa 93  Q
    |||||||||| ||||| ||| ||||||||||||||   |||||||||||||| |||||||    
T  24774741 tttgactttattttatattttgttatagaaatagtttatatataagcacttacatgataa 24774682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 13360717 - 13360659
Alignment:
Q  38 ttgactttaatttatttttcgttatagaaatagtt---atataagcacttatatgataa 93  Q
    ||||||||| ||||| ||| |||||||||||||||   | |||||||||||||||||||    
T  13360717 ttgactttattttatattttgttatagaaatagtttgcacataagcacttatatgataa 13360659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 35095869 - 35095929
Alignment:
Q  36 atttgactttaatttatttttcgttatagaaatagtt---atataagcacttatatgataa 93  Q
    ||||||||||| ||||| ||| |||||||||||||||   |||||||||||||||||||||    
T  35095869 atttgactttattttatcttttgttatagaaatagtttaaatataagcacttatatgataa 35095929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 45535367 - 45535402
Alignment:
Q  35 tatttgactttaatttatttttcgttatagaaatag 70  Q
    |||||||||||||||||||||| |||||||||||||    
T  45535367 tatttgactttaatttattttttgttatagaaatag 45535402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 50016044 - 50016104
Alignment:
Q  36 atttgactttaatttatttttcgttatagaaatagt---tatataagcacttatatgataa 93  Q
    ||||||||||| ||||| ||| ||||||||||||||   || |||||||||||||||||||    
T  50016044 atttgactttattttatatttggttatagaaatagtccatacataagcacttatatgataa 50016104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 19629284 - 19629249
Alignment:
Q  35 tatttgactttaatttatttttcgttatagaaatag 70  Q
    |||||||||||||||||||||| |||||||||||||    
T  19629284 tatttgactttaatttattttttgttatagaaatag 19629249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 19826185 - 19826150
Alignment:
Q  35 tatttgactttaatttatttttcgttatagaaatag 70  Q
    |||||||||||||||||||||| |||||||||||||    
T  19826185 tatttgactttaatttattttttgttatagaaatag 19826150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 37053577 - 37053518
Alignment:
Q  37 tttgactttaatttatttttcgttatagaaatagt---tatataagcacttatatgataa 93  Q
    |||||||||| ||||||||  ||||||||||||||   || |||||||||||||||||||    
T  37053577 tttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataa 37053518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 38355202 - 38355142
Alignment:
Q  36 atttgactttaatttatttttcgttatagaaatag-ttat-ataagcacttatatgataaa 94  Q
    |||||||| || |||||||| |||||||||||||| |||| ||||| ||||||||||||||    
T  38355202 atttgactctattttattttacgttatagaaatagcttataataagtacttatatgataaa 38355142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 6723 - 6783
Alignment:
Q  36 atttgactttaatttatttttcgttatagaaatagt---tatataagcacttatatgataa 93  Q
    ||||||||| | ||||||||| ||||||||||||||   || |||||||||||||||||||    
T  6723 atttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataa 6783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 116642 - 116702
Alignment:
Q  36 atttgactttaatttatttttcgttatagaaatagt---tatataagcacttatatgataa 93  Q
    ||||||||| | ||||||||| ||||||||||||||   || |||||||||||||||||||    
T  116642 atttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataa 116702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 14482186 - 14482126
Alignment:
Q  36 atttgactttaatttatttttcgttatagaaatagt---tatataagcacttatatgataa 93  Q
    ||||||||||| ||||| ||| ||||||||||||||   || |||||||||||||||||||    
T  14482186 atttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataa 14482126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 24160622 - 24160668
Alignment:
Q  74 tataagcacttatatgataaacgttcaattaaattgtttatcggaac 120  Q
    |||||||||||||||||||| |||| |||||| |||||||| |||||    
T  24160622 tataagcacttatatgataagcgtttaattaagttgtttattggaac 24160668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 4071866 - 4071825
Alignment:
Q  36 atttgactttaatttatttttcgttatagaaatagttatata 77  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||    
T  4071866 atttgactttattttatcttttgttatagaaatagttatata 4071825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 1161 - 1225
Alignment:
Q  37 tttgactttaatttatttttcgttatagaaatag-ttat--ataagcacttatatgataaacgtt 98  Q
    |||||||||| ||||| ||| ||||||||||||| ||||  |||||||||||||||||| |||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtt 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 2814 - 2750
Alignment:
Q  37 tttgactttaatttatttttcgttatagaaatag-ttat--ataagcacttatatgataaacgtt 98  Q
    |||||||||| ||||| ||| ||||||||||||| ||||  |||||||||||||||||| |||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtt 2750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University